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galaxy-lib

Subset of Galaxy (http://galaxyproject.org/) core code designed to be used as a library.

https://github.com/galaxyproject/galaxy-lib

Science Score: 10.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    7 of 19 committers (36.8%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (6.7%) to scientific vocabulary

Keywords

library python usegalaxy

Keywords from Contributors

bioinformatics sequencing dna genomics ngs workflow-engine cloudman stable lesson english
Last synced: 6 months ago · JSON representation

Repository

Subset of Galaxy (http://galaxyproject.org/) core code designed to be used as a library.

Basic Info
  • Host: GitHub
  • Owner: galaxyproject
  • License: other
  • Language: Python
  • Default Branch: master
  • Homepage:
  • Size: 1.21 MB
Statistics
  • Stars: 12
  • Watchers: 26
  • Forks: 19
  • Open Issues: 15
  • Releases: 0
Archived
Topics
library python usegalaxy
Created about 10 years ago · Last pushed over 5 years ago
Metadata Files
Readme Changelog Contributing License Code of conduct

README.rst 

.. image:: https://readthedocs.org/projects/galaxy-lib/badge/?version=latest
   :target: http://galaxy-lib.readthedocs.io/en/latest/?badge=latest
   :alt: Documentation Status

.. image:: https://badge.fury.io/py/galaxy-lib.svg
   :target: https://pypi.python.org/pypi/galaxy-lib/

.. image:: https://travis-ci.org/galaxyproject/galaxy-lib.png?branch=master
   :target: https://travis-ci.org/galaxyproject/galaxy-lib

THIS LIBRARY IS DEPRECATED, PLEASE USE `galaxy-tool-util `_ INSTEAD!
----------------------------------------------------------------------------------------------------------------

Overview
--------

A small subset of the Galaxy_ project for reuse outside the core. This subset has minimal dependencies and is Python 3 compatible.

* Free software: Academic Free License version 3.0
* Documentation: https://galaxy-lib.readthedocs.org.
* Code: https://github.com/galaxyproject/galaxy-lib


.. _Galaxy: http://galaxyproject.org/
.. _GitHub: https://github.com/
.. _Docker: https://www.docker.com/
.. _Homebrew: http://brew.sh/
.. _linuxbrew: https://github.com/Homebrew/linuxbrew
.. _Vagrant: https://www.vagrantup.com/
.. _Travis CI: http://travis-ci.org/
.. _`tools-devteam`: https://github.com/galaxyproject/tools-devteam
.. _`tools-iuc`: https://github.com/galaxyproject/tools-iuc
.. _Publishing to the Tool Shed: http://planemo.readthedocs.org/en/latest/publishing.html
.. _Common Workfow Language: http://common-workflow-language.github.io

Owner

  • Name: Galaxy Project
  • Login: galaxyproject
  • Kind: organization
  • Email: outreach@galaxyproject.org

Galaxy is an open, web-based platform for data-intensive research.

GitHub Events

Total
Last Year

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 534
  • Total Committers: 19
  • Avg Commits per committer: 28.105
  • Development Distribution Score (DDS): 0.185
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
John Chilton j****n@g****m 435
Björn Grüning b****n@g****u 33
Nicola Soranzo n****o@e****k 20
Bjoern Gruening b****g@g****m 20
Marcel Bargull m****l@u****u 4
Martin Cech m****n@b****u 3
Nate Coraor n****e@b****u 2
Jillian Rowe j****e@g****m 2
Dave Bouvier d****e@b****u 2
mvdbeek m****k@g****m 2
daler d****r@n****v 2
Pablo Moreno p****2 2
Tomoya Tanjo t****o@g****m 1
Nicola Soranzo n****o@g****m 1
Martin Cech c****n@g****m 1
E Rasche h****r@h****g 1
Dannon Baker d****r@g****m 1
Michael R. Crusoe m****e@g****m 1
Johannes Köster j****r@t****e 1
Committer Domains (Top 20 + Academic)
bx.psu.edu: 3 tu-dortmund.de: 1 hx42.org: 1 niddk.nih.gov: 1 udo.edu: 1 earlham.ac.uk: 1 gruenings.eu: 1

Issues and Pull Requests

Last synced: 7 months ago

All Time
  • Total issues: 15
  • Total pull requests: 85
  • Average time to close issues: 3 days
  • Average time to close pull requests: 9 days
  • Total issue authors: 9
  • Total pull request authors: 13
  • Average comments per issue: 2.6
  • Average comments per pull request: 0.82
  • Merged pull requests: 73
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • pcm32 (5)
  • jmchilton (2)
  • mbargull (2)
  • mr-c (1)
  • nsoranzo (1)
  • rsuchecki (1)
  • edwardsnj (1)
  • jayvdb (1)
  • bgruening (1)
Pull Request Authors
  • jmchilton (49)
  • bgruening (14)
  • nsoranzo (9)
  • mbargull (4)
  • mr-c (1)
  • martenson (1)
  • davebx (1)
  • jayvdb (1)
  • hexylena (1)
  • pcm32 (1)
  • simonbray (1)
  • jerowe (1)
  • natefoo (1)
Top Labels
Issue Labels
enhancement (1) question (1)
Pull Request Labels
enhancement (2) bug (1)

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 968 last-month
  • Total docker downloads: 291
  • Total dependent packages: 4
  • Total dependent repositories: 7
  • Total versions: 86
  • Total maintainers: 4
pypi.org: galaxy-lib

Subset of Galaxy (http://galaxyproject.org/) core code base designed to be used a library.

  • Versions: 86
  • Dependent Packages: 4
  • Dependent Repositories: 7
  • Downloads: 968 Last month
  • Docker Downloads: 291
Rankings
Docker downloads count: 1.6%
Dependent packages count: 1.8%
Dependent repos count: 5.6%
Average: 6.9%
Downloads: 7.9%
Forks count: 8.6%
Stargazers count: 16.0%
Maintainers (4)
jmchilton mvdbeek nsoranzo bgruening
Last synced: 7 months ago

Dependencies

dev-requirements.txt pypi
  • coverage * development
  • flake8 * development
  • nose * development
  • pyflakes * development
  • readme * development
  • recommonmark * development
  • sphinx * development
  • sphinx_rtd_theme * development
  • tox * development
  • twine * development
  • unittest2 * development
  • wheel * development
requirements.txt pypi
  • boltons *
  • docutils *
  • markupsafe *
  • packaging *
  • pyyaml *
  • six >=1.9.0