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flowutils

FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation and transformation tasks commonly used within the flow community.

https://github.com/whitews/flowutils

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (14.5%) to scientific vocabulary

Keywords

cytometry fcs fcs-files flow flow-cytometry flow-cytometry-analysis flow-cytometry-data python
Last synced: 6 months ago · JSON representation

Repository

FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation and transformation tasks commonly used within the flow community.

Basic Info
Statistics
  • Stars: 17
  • Watchers: 3
  • Forks: 10
  • Open Issues: 1
  • Releases: 11
Topics
cytometry fcs fcs-files flow flow-cytometry flow-cytometry-analysis flow-cytometry-data python
Created about 12 years ago · Last pushed 8 months ago
Metadata Files
Readme License

README.md

FlowUtils

PyPI license PyPI pyversions PyPI version DOI

Build & test (master) Build & test (develop) Coverage Documentation Status

FlowUtils is a Python package containing utility functions related to flow cytometry analysis, primarily focused on compensation, transformation, and gating tasks commonly used within the flow community.

FlowUtils is part of a suite of Python libraries for analyzing flow cytometry data. It was developed as an extension to the light-weight FlowIO library. FlowIO reads and writes Flow Cytometry Standard (FCS) files, and has minimal dependencies. For higher level interaction with flow cytometry data, including GatingML & FlowJo 10 support, see the related FlowKit project.

Installation

FlowUtils uses C extensions for significant performance improvements. For the most common platforms and Python versions, pre-built binaries are available in PyPI (and installable via pip). If a pre-built binary of FlowUtils is not available for your environment, then the C extensions must be compiled using the source package.

From PyPI

pip install flowutils

From GitHub source code

git clone https://github.com/whitews/flowutils cd flowutils pip install .

Documentation

API Documentation is available here.

Owner

  • Name: Scott White
  • Login: whitews
  • Kind: user
  • Location: Durham, NC

GitHub Events

Total
  • Release event: 1
  • Watch event: 2
  • Issue comment event: 1
  • Push event: 16
  • Pull request event: 2
  • Fork event: 4
  • Create event: 3
Last Year
  • Release event: 1
  • Watch event: 2
  • Issue comment event: 1
  • Push event: 16
  • Pull request event: 2
  • Fork event: 4
  • Create event: 3

Committers

Last synced: 7 months ago

All Time
  • Total Commits: 235
  • Total Committers: 4
  • Avg Commits per committer: 58.75
  • Development Distribution Score (DDS): 0.013
Past Year
  • Commits: 22
  • Committers: 2
  • Avg Commits per committer: 11.0
  • Development Distribution Score (DDS): 0.045
Top Committers
Name Email Commits
whitews w****s@g****m 232
Lorenz Gerber l****r@l****m 1
DavHau h****b@g****m 1
Bastien Dussap b****b@g****m 1
Committer Domains (Top 20 + Academic)
lablicate.com: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 10
  • Total pull requests: 4
  • Average time to close issues: 5 months
  • Average time to close pull requests: 13 days
  • Total issue authors: 9
  • Total pull request authors: 3
  • Average comments per issue: 2.6
  • Average comments per pull request: 0.5
  • Merged pull requests: 3
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 2
  • Average time to close issues: N/A
  • Average time to close pull requests: about 1 month
  • Issue authors: 0
  • Pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.5
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • whitews (2)
  • mauricelanghinrichs (1)
  • qprotex (1)
  • valentinwust (1)
  • arogozhnikov (1)
  • aromanillos (1)
  • JcGKitten (1)
  • mdbz (1)
  • krcurtis (1)
Pull Request Authors
  • BastienDussap (2)
  • DavHau (1)
  • lorenzgerber (1)
Top Labels
Issue Labels
bug (2) documentation (1) enhancement (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 4,618 last-month
  • Total dependent packages: 4
  • Total dependent repositories: 4
  • Total versions: 18
  • Total maintainers: 1
pypi.org: flowutils

Flow Cytometry Standard Utilities

  • Versions: 18
  • Dependent Packages: 4
  • Dependent Repositories: 4
  • Downloads: 4,618 Last month
Rankings
Dependent packages count: 1.9%
Downloads: 6.2%
Dependent repos count: 7.5%
Average: 9.0%
Forks count: 12.5%
Stargazers count: 17.1%
Maintainers (1)
whitews
Last synced: 6 months ago

Dependencies

setup.py pypi
  • numpy >=1.20
.github/workflows/build-test-base.yml actions
  • actions/checkout v4 composite
  • actions/setup-python v4 composite
  • codecov/codecov-action v3 composite
.github/workflows/tests_develop.yml actions
  • actions/checkout v4 composite
  • actions/setup-python v4 composite
  • codecov/codecov-action v3 composite
.github/workflows/tests_master.yml actions
.github/workflows/wheels.yml actions
  • actions/checkout v4 composite
  • actions/setup-python v4 composite
  • actions/upload-artifact v3 composite
docs/requirements.txt pypi
  • Sphinx ==6.2.1
  • sphinx_rtd_theme ==1.2.1
pyproject.toml pypi