rmats2sashimiplot - v3.0.0

• Rename -t parameter to --event-type
• Add --keep-event-chr-prefix and --remove-event-chr-prefix
• Allow s1,s2,b1,b2 arguments to be a file containing paths
• Add --fig-height and --fig-width
• Replace deprecated matplotlib import
• Allow using a csi index for bam files
• Fix exon coordinate display for events
• Only require a label argument if the sample group is provided
• Fix for --min-counts parameter
• Reduce empty space in plot
• Replace ':' with '_' to support more file systems

- Python
Published by EricKutschera almost 3 years ago

rmats2sashimiplot - v2.0.4

• Support Python 3
• Allow running a single sample
• Handle mRNA and transcript the same in the annotation files
• Handle BAMs without the chr prefix from the rmats events file

- Python
Published by EricKutschera over 5 years ago

rmats2sashimiplot - v2.0.3

• The BAM files should follow the same headers naming convention as the GFF file. Please check the sequence name in BAM and GFF before running rmats2sashimiplot.

- Python
Published by ShiehShieh over 8 years ago

rmats2sashimiplot - v2.0.2

Changed the default minimum junction count (--min-counts) to 0.

- Python
Published by ShiehShieh almost 9 years ago

rmats2sashimiplot - v2.0.0

• Preliminary release of rmats2sashimiplot.
• Highly customizable.
• Bug fix for y-axis definition. (Using a modified RPKM now.)
• Bug fix for A3SS and A5SS.

- Python
Published by ShiehShieh almost 9 years ago