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Recent Releases of nglview-js-widgets

nglview-js-widgets - v3.1.4

Works for nbclassic and VSCode (use NGL 2.1.1)

Known to works with - jupyter-lab: 4.2.6 - jupyter-notebook (lab): 7.2.2 - jupyter-nbclassic: 1.1.0

- Jupyter Notebook
Published by hainm over 1 year ago

nglview-js-widgets -

- Jupyter Notebook
Published by hainm almost 2 years ago

nglview-js-widgets - v3.1.2

v3.1.2

FIX movie rendering #1103 #1102

- Jupyter Notebook
Published by hainm over 2 years ago

nglview-js-widgets - v3.1.1

v3.1.1

- Jupyter Notebook
Published by hainm over 2 years ago

nglview-js-widgets - v3.1.0

v3.1.0

- Jupyter Notebook
Published by hainm over 2 years ago

nglview-js-widgets - v3.0.9

v3.0.9

- Jupyter Notebook
Published by hainm over 2 years ago

nglview-js-widgets - v3.0.8

v3.0.8

- Jupyter Notebook
Published by hainm almost 3 years ago

nglview-js-widgets - v3.0.7

v3.0.7

- Jupyter Notebook
Published by hainm almost 3 years ago

nglview-js-widgets - v3.0.6

https://github.com/nglviewer/nglview/pull/1064

- Jupyter Notebook
Published by hainm about 3 years ago

nglview-js-widgets - v3.0.5

Support jupyterlab

- Jupyter Notebook
Published by hainm about 3 years ago

nglview-js-widgets - v3.0.4

  • works for both ipywigets 7 and 8 in traditional notebook
  • does not work with jupyterlab yet (need volunteers please :) )

- Jupyter Notebook
Published by hainm about 3 years ago

nglview-js-widgets - v3.0.3

v3.0.3

- Jupyter Notebook
Published by hainm about 5 years ago

nglview-js-widgets - v3.0.2

v3.0.2

- Jupyter Notebook
Published by hainm about 5 years ago

nglview-js-widgets - v3.0.1

https://github.com/nglviewer/nglview/pull/969

- Jupyter Notebook
Published by hainm about 5 years ago

nglview-js-widgets - v3.0.0

v3.0.0

- Jupyter Notebook
Published by hainm about 5 years ago

nglview-js-widgets - v2.7.8

Support Jupyter lab 3.0

https://github.com/nglviewer/nglview/releases/download/v2.7.7/nglview-js-widgets-2.7.7.tar.gz

- Jupyter Notebook
Published by hainm about 5 years ago

nglview-js-widgets - v2.7.7

v2.7.7

- Jupyter Notebook
Published by hainm about 6 years ago

nglview-js-widgets - v2.7.6

v2.7.6

- Jupyter Notebook
Published by hainm about 6 years ago

nglview-js-widgets - v2.7.5

  • ENH: Works with jupyterlab >= 2.0 #877
  • Disable context menu from jupyterlab when right clicking. #877
  • CHANGES from v2.7.1:
    • FIX for mdanalysis: avoid lots of warnings
    • FIX contrib.movie.MovieMaker.make() should call perframe_hook if specified https://github.com/arose/nglview/commit/92d7d36583e4772e38dc2ca9e95a83fa474e68e6
    • ENH: support writing additional movie formats (e.g: mp4)
    • ENH: Added two optional keyword arguments to show_rdkit
    • ENH: QCElemental: Better nglview integration through SDF files
    • ENH: Add principal_axes as an alias of axes …

- Jupyter Notebook
Published by hainm over 6 years ago

nglview-js-widgets - v2.7.4

v2.7.4

- Jupyter Notebook
Published by hainm over 6 years ago

nglview-js-widgets - v2.7.3

v2.7.3

- Jupyter Notebook
Published by hainm over 6 years ago

nglview-js-widgets - v2.7.1

  • FIX: work with jupyterlab https://github.com/arose/nglview/commit/9ce60e16a9177058c15e85c9509cdfd9cc004011

- Jupyter Notebook
Published by hainm almost 7 years ago

nglview-js-widgets - v2.7.0

  • ENH: Movie making without setting timeout (#842)
  • Cosmetic changes:
    • Typescript + theme css (#841)
    • Use async syntax (https://github.com/arose/nglview/commit/395e7712f95f37be4614e1accfd14d0a916bb4c0)

- Jupyter Notebook
Published by hainm almost 7 years ago

nglview-js-widgets - v2.6.9

FIX: correctly display player in embed mode.

- Jupyter Notebook
Published by hainm almost 7 years ago

nglview-js-widgets - v2.6.8

- Jupyter Notebook
Published by hainm almost 7 years ago

nglview-js-widgets - v2.6.7

- Jupyter Notebook
Published by hainm almost 7 years ago

nglview-js-widgets - v2.6.5

- Jupyter Notebook
Published by hainm almost 7 years ago

nglview-js-widgets - v2.6.1

- Jupyter Notebook
Published by hainm almost 7 years ago

nglview-js-widgets - v2.6.0

  • Support dark theme (view.guitheme = 'dark'), mainly used for jupyterlab environment.
  • Embed enhancement (work without using nglview.write_html)

- Jupyter Notebook
Published by hainm almost 7 years ago

nglview-js-widgets - v2.5.2

Work with jupyterlab 1.0

- Jupyter Notebook
Published by hainm almost 7 years ago

nglview-js-widgets - v2.5.1

FIX embedding in v2.5.0

What's new (vs 2.2.0) - Support NGL's GUI - Use ipywidgets' player instead of jquerry's one.

- Jupyter Notebook
Published by hainm almost 7 years ago

nglview-js-widgets - v2.5.0

- Jupyter Notebook
Published by hainm almost 7 years ago

nglview-js-widgets - v2.2.0

- Jupyter Notebook
Published by hainm about 7 years ago

nglview-js-widgets - v2.1.0

  • We can call render_image multiple times within a cell now, no threading, no wait.

- Jupyter Notebook
Published by hainm about 7 years ago

nglview-js-widgets - v2.0.0

  • Focus on python >= 3.6 development
  • Update NGL 2.0.0-dev.36
  • FIX custom color scheme serialization https://github.com/arose/nglview/commit/c017202fb2b7b0ec103ab043b6a0a23214fbba3c
  • ADD support for color by volume https://github.com/arose/nglview/commit/89a678d68d1a26891647dd4cb02eab582157f047
  • ADD sandbox code for lab_display https://github.com/arose/nglview/commit/92c88f2da00dfcef87344d7917d96c72ced935d0

- Jupyter Notebook
Published by hainm about 7 years ago

nglview-js-widgets - v1.2.2

  • ADD smooth https://github.com/arose/nglview/commit/03d574533bb34a4633bf41e8d0562616d10d6b3f
  • ADD | `show_iodata(obj)` | Shows `iodata's IOData` | | `show_psi4(obj)` | Shows `psi4's Molecule` | | `show_qcelementary` | Shows `QCelementary's Molecule` | | `show_openbabel` | Shows `openbabel's OMol` | | `show_prody` | Shows `prody's Ensemble or AtomGroup`

- Jupyter Notebook
Published by hainm about 7 years ago

nglview-js-widgets - v1.2.1

  • FIX #787

- Jupyter Notebook
Published by hainm about 7 years ago

nglview-js-widgets - v1.2.0

v1.2.0:

  • FIX jupyterlab file path #784
  • UPGRADE: NGL 2.0.0-dev.35 https://github.com/arose/nglview/commit/3c5b860a8b67b6fa88cca15cd5c52aefc601ec0a
  • ADD show_pymatgen https://github.com/arose/nglview/commit/0472287d5ed7db265b93ac3eb367f2d33f775dab

- Jupyter Notebook
Published by hainm about 7 years ago

nglview-js-widgets - v1.1.9

773

- Jupyter Notebook
Published by hainm over 7 years ago

nglview-js-widgets - v1.1.8.4

Same as v1.1.8. The v1.1.8.2 and v1.1.8.3 are pretty bad, they accidentally included ngl 2.0.0-dev0.0

- Jupyter Notebook
Published by hainm over 7 years ago

nglview-js-widgets - v1.1.8.2

Just update js files for v1.1.8.1

- Jupyter Notebook
Published by hainm over 7 years ago

nglview-js-widgets - v1.1.8.1

FIX version for jupyter-lab: #772

- Jupyter Notebook
Published by hainm over 7 years ago

nglview-js-widgets - v1.1.8

  • Add _ColorScheme (#670)
  • FIX: ecode bytestring from urlopen (#763)
  • ADD: _execute__js_code (#768)
  • UPDATE: "ngl": "^2.0.0-dev.34" (FIX: #742 and #761)

- Jupyter Notebook
Published by hainm over 7 years ago

nglview-js-widgets - v1.1.7

  • Correctly set nglview.widget.frontend_version #750

- Jupyter Notebook
Published by hainm almost 8 years ago

nglview-js-widgets - v1.1.6

Compatible with ipywidgets 7.4.

- Jupyter Notebook
Published by hainm almost 8 years ago

nglview-js-widgets - v1.1.5

Update ngl@2.0.0-dev.33

- Jupyter Notebook
Published by hainm almost 8 years ago

nglview-js-widgets - v1.1.3

  • FIX: view.displayimage https://github.com/arose/nglview/issues/736

- Jupyter Notebook
Published by hainm about 8 years ago

nglview-js-widgets - v1.1.2

Update nglview packaging to work with jupyterlab 0.31.12

https://github.com/arose/nglview/blob/4a5e86b2519861d53238739bd402d33599f0e0b9/docs/nglview-jupyterlab/index.md

- Jupyter Notebook
Published by hainm over 8 years ago

nglview-js-widgets - v1.1.1

- Jupyter Notebook
Published by hainm over 8 years ago

nglview-js-widgets - v1.0

  • SUPPORT ipywidgets 7.0 and drop ipywidgets 5.2
  • UPGRADE: NGL v1.0.0-beta.4
  • SUPPORT: Jupyterlab v0.27
  • ADD: show_biopython
  • ADD: show_iotbx
  • ADD: show_rosetta
  • ADD: show_file
  • ADD: add_slice
  • ADD: add_buffer
  • ADD: add_label
  • ADD: movie making
  • ADD: set_coordinates for ComponentViewer
  • FIX: nglview install always overwrite
  • SUPPORT: widget serialization and sphinx-jupyter
  • ADD: write_html

- Jupyter Notebook
Published by hainm over 8 years ago

nglview-js-widgets - v1.0.b9

- Jupyter Notebook
Published by hainm over 8 years ago

nglview-js-widgets - v1.0.b8

- Jupyter Notebook
Published by hainm over 8 years ago

nglview-js-widgets - v1.0.b7

- Jupyter Notebook
Published by hainm over 8 years ago

nglview-js-widgets - v1.0.b6

- Jupyter Notebook
Published by hainm over 8 years ago

nglview-js-widgets - v1.0.b5

- Jupyter Notebook
Published by hainm over 8 years ago

nglview-js-widgets - v1.0.b4

- Jupyter Notebook
Published by hainm over 8 years ago

nglview-js-widgets - v1.0.b3

- Jupyter Notebook
Published by hainm over 8 years ago

nglview-js-widgets - v1.0.b2

- Jupyter Notebook
Published by hainm almost 9 years ago

nglview-js-widgets - v1.0.b1

- Jupyter Notebook
Published by hainm almost 9 years ago

nglview-js-widgets -

v1.0.a10

- Jupyter Notebook
Published by hainm almost 9 years ago

nglview-js-widgets - v1.0.a9

- Jupyter Notebook
Published by hainm almost 9 years ago

nglview-js-widgets - v1.0.a8

- Jupyter Notebook
Published by hainm almost 9 years ago

nglview-js-widgets - v1.0.a7

- Jupyter Notebook
Published by hainm almost 9 years ago

nglview-js-widgets - v1.0.a6

- Jupyter Notebook
Published by hainm almost 9 years ago

nglview-js-widgets - v1.0.a5

- Jupyter Notebook
Published by hainm almost 9 years ago

nglview-js-widgets - v1.0.a4

Known to work with: jupyterlab_version=0.26.5 notebook_version=5.0.0 lab_manager_version=0.25.11 ipywidgets_version=7.0.0b12 widgetsnbextension_version=3.0.0b12

- Jupyter Notebook
Published by hainm almost 9 years ago

nglview-js-widgets - v1.0.a3

- Jupyter Notebook
Published by hainm almost 9 years ago

nglview-js-widgets - v1.0.a2

- Jupyter Notebook
Published by hainm almost 9 years ago

nglview-js-widgets - v1.0.a1

- Jupyter Notebook
Published by hainm almost 9 years ago

nglview-js-widgets - v1.0.a0

- Jupyter Notebook
Published by hainm almost 9 years ago

nglview-js-widgets - v0.6.5

FIX: clear_representation #631

- Jupyter Notebook
Published by hainm almost 9 years ago

nglview-js-widgets - v0.6.4

  • Update NGL-0.10.3
  • ADD: view.shape.add_label

- Jupyter Notebook
Published by hainm about 9 years ago

nglview-js-widgets - v0.6.3

  • ENH: only install extension to --sys-prefix
  • ADD: SchrodingerStructure
  • ADD: viewer_control.py
  • UPDATE: ngl 0.10.10-dev
  • ADD: viewxz_plane

- Jupyter Notebook
Published by hainm about 9 years ago

nglview-js-widgets - v0.6.2.4

(for pip versioning). Same as v0.6.2.3

- Jupyter Notebook
Published by hainm over 9 years ago

nglview-js-widgets - v0.6.2.3

  • ADD: movie_maker to widget
  • ADD: ASETrajectory
  • REMOVE: PlaceProxy
  • FIX: use Integer traitlet to handle long on Py27 (win)

- Jupyter Notebook
Published by hainm over 9 years ago

nglview-js-widgets - v0.6.2.2

FIX: version for pypi ENH: user can update parameters before displaying view ADD: negative indexing for view ADD: support ipywidgets 6.x

- Jupyter Notebook
Published by hainm over 9 years ago

nglview-js-widgets - v0.6.2.1

FIX: activate nglview extension with conda

- Jupyter Notebook
Published by hainm over 9 years ago

nglview-js-widgets - v0.6.2

ADD: support jupyterlab

- Jupyter Notebook
Published by hainm over 9 years ago

nglview-js-widgets -

Please see v0.6.1 note: https://github.com/arose/nglview/releases/tag/v0.6.1

- Jupyter Notebook
Published by hainm over 9 years ago

nglview-js-widgets - v0.6.1

ADD: movie maker (using moviepy) ADD: add_axes ADD: show_htmd ADD: show_ase ENH: internal reorganization ENH: GUI CHANGE: require ipywidgets >= 5.2.2 FIX: firefox bug (not updating view) FIX: conda build by removing install requirement in setup.py

Install

Note: The released version only works with ipywidgets >= 5.2.2 - Available on bioconda channel

``` bash conda config --add channels conda-forge conda install nglview -c bioconda jupyter-nbextension enable nglview --py --user

# if you already installed nglview, you can upgrade conda upgrade nglview jupyter-nbextension enable nglview --py --user ``` - Available on PyPI

pip install nglview

- Jupyter Notebook
Published by hainm over 9 years ago

nglview-js-widgets -

  • ADD: nglview command line for quickly opening notebook.
  • ADD: add_text to display
  • FIX: view.background assignment.

- Jupyter Notebook
Published by arose about 10 years ago

nglview-js-widgets -

  • FIX: correctly handle player when adding a structure first
  • FIX: cleaned-up outdated notebooks

- Jupyter Notebook
Published by arose about 10 years ago

nglview-js-widgets - v0.5

  • ADD: basic use of binary messages for faster coordinate data transfer
  • ADD: updated to newer NGL version, (e.g. orthographic camera, anti-aliasing, much faster rendering, ...)
  • ADD: view.delay property to adjust trajectory playback
  • ADD: show_url function for loading & viewing from an url
  • ADD: view.hide() and view.show_only() convenience methods
  • ADD: show_rdkit function to view rdkit Mol objects
  • ADD: view.clear() for clearing all representations
  • ADD: view.add_unitcell(), support for the new NGL unitcell representation
  • ADD: automatic creation of attributes: view.trajectory_0, view.trajectory_1, view.component_0, ...
  • ADD: specify component index in view.add_representations, view.clear_representations
  • ADD: drag and drop files into widget
  • ADD: extra TrajectoryPlayer widget available via view.player
  • ADD: view.camera property (perspective and orthographic, new in NGL)
  • ADD: view.background property to change the viewer background (color name or hex value)
  • ADD: view.orientation property to synchronize cameras of two viewer widgets
  • ADD: view multiple trajectories via view.add_trajectory(), view.add_component()
  • ADD: view.download_image() to render high quality image and trigger download in browser
  • ADD: view.render_image() to render image for display in the notebook
  • ADD: view.center_view() to center
  • ADD: select atoms by their indices, given as a List
  • ADD: shortcuts for view.addrepresentation (view.addcartoon, view.add_rope, ...)
  • ADD: ParmEdTrajectory adaptor and show_parmed function to view ParmEd objects
  • ENH: view.add_trajectory now accept pytraj.Trajectory, mdtraj.Trajectory, MDAnalysis.Universe, parmed.Structure
  • ENH: view.addrepresentations now accepts keywords in both snakecase and CamelCase
  • ENH: smoother trajectory playing
  • ENH: smoother rendering when adding new representation
  • MIGRATION: change html/static to js/
  • MIGRATION: change sending base64 to binary coordinates
  • MIGRATION: change view.trajectory to view.trajlist
  • MIGRATION: change get_frame_count method to n_frames property
  • MIGRATION: remove get_coordinates_dict
  • FIX: symlink error

- Jupyter Notebook
Published by hainm about 10 years ago

nglview-js-widgets -

  • ADD: Convenience methods to show widget from various sources
  • ADD: PyTrajTrajectory adaptor
  • ADD: MDAnalysisTrajectory adaptor
  • ADD: NGLWidget.add_representation() method
  • ADD: append a "WebGL not supported message" to widget if so
  • ADD: parameters widget property, passed to NGL stage object
  • ADD: params property for Structure, dict passed to NGL
  • CODE: be less noisy when importing nglview
  • DOC: more usage examples, API description
  • DOC: added CHANGELOG file
  • BUILD: added example files in the package

- Jupyter Notebook
Published by arose over 10 years ago

nglview-js-widgets -

  • MIGRATION: Trajectory classes need get_frame_count method
  • MIGRATION: removed set_frame method use new frame property
  • ADD: simple trajectory player
  • ADD: widget resizing support
  • ADD: picking support (gui info; picked property)
  • CODE: check for file existence in FileStructure and SimpletrajTrajectory

- Jupyter Notebook
Published by arose over 10 years ago

nglview-js-widgets -

  • MIGRATION: changed get_string to get_structure_string
  • MIGRATION: changed get_coordinates to get_coordinates_list
  • DOC: usage, interface classes
  • ADD: MDTrajTrajectory adaptor
  • CODE: added interface classes
  • CODE: suggested packages; mdtraj, simpletraj

- Jupyter Notebook
Published by arose over 10 years ago