Releases | Open Source Science

The logic for reading FSL-FLIRT transforms from file previously overlooked a quirk whereby FLIRT flips images whose xforms have positive determinant (see, for example, https://neurostars.org/t/understanding-fsl-flirt-transformation-matrices/26406). This could result in a spurious flip when these transforms were applied, if the originally registered images were in, say, LAS and RAS orientations. This detail is now handled when FLIRT transforms are imported. (Reported by Martin Wilson.)
Affine initialisation matrices for linear registration would previously be replaced by a default internally. This has been corrected.
Default affine initialisation matrices now take the pixel/voxel dimensions into account when image sform and qform codes are both zero.
The package's dependency on the ore package has been removed, with base R regular expression functions being used instead.

- C++
Published by jonclayden over 1 year ago

A NiftyReg class method referencing a nonexistent data member has been removed. (Picked up by LLVM pre-19, reported by BDR.)

- C++
Published by jonclayden over 1 year ago

Objects of class "niftyregRDS" gain a simple asAffine() method for convenience.
The code should now ensure that an affine result from loadTransform() has the "affine" class.
An incorrect internal assignment has been corrected.

- C++
Published by jonclayden over 1 year ago

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