Releases | Open Source Science

What's Changed

Remove web.py for testing migration by @joshmoore in https://github.com/ome/omero-py/pull/5
5.5.dev2 with Ice deployment by @joshmoore in https://github.com/ome/omero-py/pull/6
Fix unit tests by @will-moore in https://github.com/ome/omero-py/pull/10
rst-lint: add call from docker by @joshmoore in https://github.com/ome/omero-py/pull/13
Remove package WARNING by @joshmoore in https://github.com/ome/omero-py/pull/15
Revert to manylinux to speed up builds by @joshmoore in https://github.com/ome/omero-py/pull/16
Bump to blitz python zip 5.5.5 by @joshmoore in https://github.com/ome/omero-py/pull/24
blitz gateway unit tests by @will-moore in https://github.com/ome/omero-py/pull/17

Full Changelog: https://github.com/ome/omero-py/commits/v5.5.1

- Python
Published by sbesson 9 months ago

What's Changed

Remove Python 3.8 from the testing matrix by @sbesson in https://github.com/ome/omero-py/pull/434
omero.HdfStorage.update: add size check on data.rowNumbers by @sbesson in https://github.com/ome/omero-py/pull/431
Upgrade to macOS 14 Actions runner image by @sbesson in https://github.com/ome/omero-py/pull/440
Fixes issue #438 by @tstoeter in https://github.com/ome/omero-py/pull/439
Fix imagetohtml pixel unit by @Tom-TBT in https://github.com/ome/omero-py/pull/441
move repr_html to _ImageWrapper by @jo-mueller in https://github.com/ome/omero-py/pull/429
Add changelog for 5.19.6 release by @sbesson in https://github.com/ome/omero-py/pull/442

New Contributors

@tstoeter made their first contribution in https://github.com/ome/omero-py/pull/439
@Tom-TBT made their first contribution in https://github.com/ome/omero-py/pull/441

Full Changelog: https://github.com/ome/omero-py/compare/v5.19.5...v5.19.6

- Python
Published by sbesson 9 months ago

What's Changed

Prevent hang on exit while omero.client keepalive is active by @DavidStirling in https://github.com/ome/omero-py/pull/424

New Contributors

@DavidStirling made their first contribution in https://github.com/ome/omero-py/pull/424

Full Changelog: https://github.com/ome/omero-py/compare/v5.19.4...v5.19.5

- Python
Published by sbesson 9 months ago

What's Changed

admin rewrite: make OMERO.tables module configurable by @sbesson in https://github.com/ome/omero-py/pull/419
Allow a caller to ignore row numbers by @chris-allan in https://github.com/ome/omero-py/pull/418
Switch result logging to DEBUG level by @chris-allan in https://github.com/ome/omero-py/pull/417
Parse omero.logging properties under new Logging heading by @sbesson in https://github.com/ome/omero-py/pull/416

Full Changelog: https://github.com/ome/omero-py/compare/v5.19.3...v5.19.4

- Python
Published by sbesson 9 months ago

What's Changed

Remove ref to ome channel for zeroc-ice by @jburel in https://github.com/ome/omero-py/pull/407
Update readme by @jburel in https://github.com/ome/omero-py/pull/411
use gs wheel to match doc by @jburel in https://github.com/ome/omero-py/pull/410
Enforce numpy is lower than 2.0.0 by @sbesson in https://github.com/ome/omero-py/pull/414

Full Changelog: https://github.com/ome/omero-py/compare/v5.19.2...v5.19.3

- Python
Published by sbesson 9 months ago

What's Changed

Consume pre-build Ice Python wheel packages on Windows builds by @sbesson in https://github.com/ome/omero-py/pull/403
update the build steps by @jburel in https://github.com/ome/omero-py/pull/406
getGridSize() handles plates with no Wells by @will-moore in https://github.com/ome/omero-py/pull/398
added _repr_html_ method for _ImageWrapper by @jo-mueller in https://github.com/ome/omero-py/pull/394
FilesetWrapper lazy loads Images and UsedFiles by @will-moore in https://github.com/ome/omero-py/pull/405
Session ID and constructor by @jburel in https://github.com/ome/omero-py/pull/400

Full Changelog: https://github.com/ome/omero-py/compare/v5.19.1...v5.19.2

- Python
Published by sbesson 9 months ago

What's Changed

Fix Windows regression in omero_ext.path by @sbesson in https://github.com/ome/omero-py/pull/402

Full Changelog: https://github.com/ome/omero-py/compare/v5.19.0...v5.19.1

- Python
Published by sbesson 9 months ago

What's Changed

Update README to use -c conda-forge by @joshmoore in https://github.com/ome/omero-py/pull/397
Removal of python-future compatibility code by @sbesson in https://github.com/ome/omero-py/pull/390
Add changelog for 5.19.0 release by @sbesson in https://github.com/ome/omero-py/pull/399

This release adds preliminary support for running OMERO.py on Python 3.12 environments.

The future dependency should be considered deprecated and will be removed in the next minor release of OMERO.py. Downstream projects which are relying on this dependency should declare it explicitly in their configuration file.

Full Changelog: https://github.com/ome/omero-py/compare/v5.18.0...v5.19.0

- Python
Published by sbesson 9 months ago

omero-py - v5.18.0

What's Changed

Set minimum version for Pillow (10.0.0) and Python (3.8) by @jburel in https://github.com/ome/omero-py/pull/388

Full Changelog: https://github.com/ome/omero-py/compare/v5.17.0...v5.18.0

- Python
Published by sbesson 9 months ago

omero-py - v5.17.0

What's Changed

use math module instead of numpy.math by @jburel in https://github.com/ome/omero-py/pull/384
Add support for Python 3.11 by @sbesson in https://github.com/ome/omero-py/pull/385
Unit tests: clean up warnings by @sbesson in https://github.com/ome/omero-py/pull/386

Full Changelog: https://github.com/ome/omero-py/compare/v5.16.1...v5.17.0

- Python
Published by sbesson 9 months ago

omero-py - v5.16.1

What's Changed

omero admin start: add warning for deprecated TLS protocols by @sbesson in https://github.com/ome/omero-py/pull/382

Full Changelog: https://github.com/ome/omero-py/compare/v5.16.0...v5.16.1

- Python
Published by sbesson 9 months ago

omero-py - v5.16.0

What's Changed

add getROIs by @barrettMCW in https://github.com/ome/omero-py/pull/380
add missing config file by @jburel in https://github.com/ome/omero-py/pull/383
Replace Portalocker by @jburel in https://github.com/ome/omero-py/pull/370
cap urllib3 to avoid openssl issue by @jburel in https://github.com/ome/omero-py/pull/371
add variable by @jburel in https://github.com/ome/omero-py/pull/372

New Contributors

@barrettMCW made their first contribution in https://github.com/ome/omero-py/pull/380

Full Changelog: https://github.com/ome/omero-py/compare/v5.15.0...v5.16.0

- Python
Published by sbesson 9 months ago

omero-py - v5.15.0

What's Changed

use ice 3.6.5 by @jburel in https://github.com/ome/omero-py/pull/361
Add top-level Git mailmap to normalize commit author variants by @sbesson in https://github.com/ome/omero-py/pull/375
Use Image.LANCZOS alias rather than Image.ANTIALIAS by @sbesson in https://github.com/ome/omero-py/pull/376
Let Ice choose the default SSL protocols that are available by @chris-allan in https://github.com/ome/omero-py/pull/377

Full Changelog: https://github.com/ome/omero-py/compare/v5.14.0...v5.15.0

- Python
Published by sbesson 9 months ago

omero-py - v5.14.0

What's Changed

Add Python 3.10 to the testing matrix by @sbesson in https://github.com/ome/omero-py/pull/357
Dev doc by @jburel in https://github.com/ome/omero-py/pull/358
use ome channel. conda-forge installs ice 3.7 binding by @jburel in https://github.com/ome/omero-py/pull/363
CLI sessions: handle case where retry is not passed as an argument by @sbesson in https://github.com/ome/omero-py/pull/364
Upgrade action by @jburel in https://github.com/ome/omero-py/pull/365
Deprecate omero.install.python_warning module by @sbesson in https://github.com/ome/omero-py/pull/362
fix channel and package by @jburel in https://github.com/ome/omero-py/pull/369
drop Python 3.7 by @jburel in https://github.com/ome/omero-py/pull/368
OMERO.py 5.14.0: changelog by @sbesson in https://github.com/ome/omero-py/pull/374

Full Changelog: https://github.com/ome/omero-py/compare/v5.13.1...v5.14.0

- Python
Published by sbesson 9 months ago

omero-py - v5.13.1

What's Changed

Add inherited-members option to the gateway automodule configuration by @sbesson in https://github.com/ome/omero-py/pull/354
fix remaining headers by @jburel in https://github.com/ome/omero-py/pull/355

Full Changelog: https://github.com/ome/omero-py/compare/v5.13.0...v5.13.1

- Python
Published by sbesson 9 months ago

omero-py - v5.13.0

What's Changed

switch to new output command by @jburel in https://github.com/ome/omero-py/pull/340
API doc by @jburel in https://github.com/ome/omero-py/pull/330
fix header from install package by @jburel in https://github.com/ome/omero-py/pull/341
fix headers by @jburel in https://github.com/ome/omero-py/pull/342
fix header for doc generation by @jburel in https://github.com/ome/omero-py/pull/343
fix header for doc generation by @jburel in https://github.com/ome/omero-py/pull/344
fix header for doc generation by @jburel in https://github.com/ome/omero-py/pull/345
remove sphinx job after rtd migration by @jburel in https://github.com/ome/omero-py/pull/349
add source file by @jburel in https://github.com/ome/omero-py/pull/350
self.lock is always none by @jburel in https://github.com/ome/omero-py/pull/346
omero admin diagnostics: move OMERO.py version as part of the output by @sbesson in https://github.com/ome/omero-py/pull/339
Remove Anonymous Diffie-Hellman default configuration by @chris-allan in https://github.com/ome/omero-py/pull/336
add env variable to fix doc generation by @jburel in https://github.com/ome/omero-py/pull/348
omero.clients: initialize connection retry reason out of the while loop by @sbesson in https://github.com/ome/omero-py/pull/353
changelog for 5.13.0 by @jburel in https://github.com/ome/omero-py/pull/351

The removal of Anonymous Diffie-Hellman will require to use of omero certificates to ensure that an OMERO server installation has, at minimum, a self-signed certificate.

Full Changelog: https://github.com/ome/omero-py/compare/v5.12.1...v5.13.0

- Python
Published by sbesson 9 months ago

omero-py - v5.12.1

What's Changed

Always report pixeldata time in the output of fs importtime by @sbesson in https://github.com/ome/omero-py/pull/335

Full Changelog: https://github.com/ome/omero-py/compare/v5.12.0...v5.12.1

- Python
Published by sbesson 9 months ago

omero-py - v5.12.0

What's Changed

Method to add time to ParametersI by @muhanadz in https://github.com/ome/omero-py/pull/327
testconfig: use native tmppath pytest fixture by @sbesson in https://github.com/ome/omero-py/pull/328
Also pass omero.db.properties and omero.db.url to reindex by @chris-allan in https://github.com/ome/omero-py/pull/329
setChannelNames performance by @will-moore in https://github.com/ome/omero-py/pull/331
Add changelog for 5.12.0 by @will-moore in https://github.com/ome/omero-py/pull/333

Full Changelog: https://github.com/ome/omero-py/compare/v5.11.2...v5.12.0

- Python
Published by sbesson 9 months ago

omero-py - v5.11.2

What's Changed

Windows import fix by @sbesson in https://github.com/ome/omero-py/pull/326

Full Changelog: https://github.com/ome/omero-py/compare/v5.11.1...v5.11.2

- Python
Published by sbesson 9 months ago

omero-py - v5.11.1

What's Changed

handle variable by @jburel in https://github.com/ome/omero-py/pull/316
update year by @jburel in https://github.com/ome/omero-py/pull/319
Don't ignore params limit if offset is None by @will-moore in https://github.com/ome/omero-py/pull/321
Changelog 5.11.1 by @will-moore in https://github.com/ome/omero-py/pull/322

Full Changelog: https://github.com/ome/omero-py/compare/v5.11.0...v5.11.1

- Python
Published by sbesson 9 months ago

omero-py - v5.11.0

What's Changed

Deprecate blacklist and forward to new isexcluded method by @sbesson in https://github.com/ome/omero-py/pull/313
Tables Out of Memory Issues by @kkoz in https://github.com/ome/omero-py/pull/314
Implementation for DatasetColumn by @muhanadz in https://github.com/ome/omero-py/pull/309
Add logic to search OMERO.tables on non Pythonic named columns by @sbesson in https://github.com/ome/omero-py/pull/287
Add CHANGELOG for omero-py 5.11.0 by @sbesson in https://github.com/ome/omero-py/pull/318

Full Changelog: https://github.com/ome/omero-py/compare/v5.10.3...v5.11.0

- Python
Published by sbesson 9 months ago

omero-py - v5.10.3

What's Changed

import --fetch-jars: allow direct link by @joshmoore in https://github.com/ome/omero-py/pull/303
fix typo by @jburel in https://github.com/ome/omero-py/pull/311
Config output exclude versions by @jburel in https://github.com/ome/omero-py/pull/312

Full Changelog: https://github.com/ome/omero-py/compare/v5.10.2...v5.10.3

- Python
Published by sbesson 9 months ago

omero-py - v5.10.2

What's Changed

Ensure we are using pyopenssl (See ome/omero-py#240) by @chris-allan in https://github.com/ome/omero-py/pull/305
Decode script stdout/stderr before printing by @jmuhlich in https://github.com/ome/omero-py/pull/310

Full Changelog: https://github.com/ome/omero-py/compare/v5.10.1...v5.10.2

- Python
Published by sbesson 9 months ago

omero-py - v5.10.1

What's Changed

change input to input_val by @lldelisle in https://github.com/ome/omero-py/pull/307

New Contributors

@lldelisle made their first contribution in https://github.com/ome/omero-py/pull/307

Full Changelog: https://github.com/ome/omero-py/compare/v5.10.0...v5.10.1

- Python
Published by sbesson 9 months ago

omero-py - v5.10.0

What's Changed

get objects by map annotations by @will-moore in https://github.com/ome/omero-py/pull/285
Support omero download Fileset:ID by @will-moore in https://github.com/ome/omero-py/pull/298
point to image.sc by @jburel in https://github.com/ome/omero-py/pull/297
Add CHANGELOG for 5.10.0 release by @sbesson in https://github.com/ome/omero-py/pull/302

The CLI feature also introduces a backwards-incompatible layout change for the download of images to mitigate the risk of data corruption associated with renaming files. The command now specifies a directory path under which all files associated with the image are downloaded using the original file names and structure.

Full Changelog: https://github.com/ome/omero-py/compare/v5.9.3...v5.10.0

- Python
Published by sbesson 9 months ago

omero-py - v5.9.3

What's Changed

Fix HdfStorage.read() implementation to work with all column types by @sbesson in https://github.com/ome/omero-py/pull/288
Fixed race condition bug in tables by @kkoz in https://github.com/ome/omero-py/pull/292
Update omero/gateway/init.py by @aherbert in https://github.com/ome/omero-py/pull/293
5.9.3 changelog by @joshmoore in https://github.com/ome/omero-py/pull/294

New Contributors

@aherbert made their first contribution in https://github.com/ome/omero-py/pull/293

Full Changelog: https://github.com/ome/omero-py/compare/v5.9.2...v5.9.3

- Python
Published by sbesson 9 months ago

omero-py - v5.9.2

What's Changed

login: add --retry=seconds option to login by @joshmoore in https://github.com/ome/omero-py/pull/283

Full Changelog: https://github.com/ome/omero-py/compare/v5.9.1...v5.9.2

- Python
Published by sbesson 9 months ago

omero-py - v5.9.1

What's Changed

download provider uses NamedTemporaryFile by @will-moore in https://github.com/ome/omero-py/pull/274
roi utils zero division fix by @will-moore in https://github.com/ome/omero-py/pull/278
Bug: obj update strips newlines by @joshmoore in https://github.com/ome/omero-py/pull/279
Replace x.getchildren with list(x) (Fix #281) by @joshmoore in https://github.com/ome/omero-py/pull/282

Full Changelog: https://github.com/ome/omero-py/compare/v5.9.0...v5.9.1

- Python
Published by sbesson 9 months ago

omero-py - v5.9.0

What's Changed

omero.server.nodedescriptors allows components to be enabled/disabled by @manics in https://github.com/ome/omero-py/pull/272

Full Changelog: https://github.com/ome/omero-py/compare/v5.8.3...v5.9.0

- Python
Published by sbesson 9 months ago

omero-py - v5.8.3

What's Changed

CLI: Fix sort(lambda) under Python 3 by @joshmoore in https://github.com/ome/omero-py/pull/264

Full Changelog: https://github.com/ome/omero-py/compare/v5.8.2...v5.8.3

- Python
Published by sbesson 9 months ago

omero-py - v5.8.2

What's Changed

Also check stdout is a tty when requiring interactive credentials by @sbesson in https://github.com/ome/omero-py/pull/256
Import test: check stderr for output by @manics in https://github.com/ome/omero-py/pull/260
Add GitHub workflow by @manics in https://github.com/ome/omero-py/pull/261
Add GitHub deploy workflow, remove travis by @manics in https://github.com/ome/omero-py/pull/262
Add Changelog for 5.8.2 by @sbesson in https://github.com/ome/omero-py/pull/259

Full Changelog: https://github.com/ome/omero-py/compare/v5.8.1...v5.8.2

- Python
Published by sbesson 9 months ago

omero-py - v5.8.1

What's Changed

Adjust how --include and --exclude are presented as options. by @mtbc in https://github.com/ome/omero-py/pull/252
Fix syntax issue in CLI argument parsing. by @mtbc in https://github.com/ome/omero-py/pull/254
Remove f-string usage for Python 3.5 compatibility by @sbesson in https://github.com/ome/omero-py/pull/257
Add CHANGELOG for 5.8.1 by @sbesson in https://github.com/ome/omero-py/pull/258

Full Changelog: https://github.com/ome/omero-py/compare/v5.8.0...v5.8.1

- Python
Published by sbesson 9 months ago

omero-py - v5.8.0

What's Changed

Add PyYAML as a dependency of omero-py by @sbesson in https://github.com/ome/omero-py/pull/228
hql.py: when querying masks, filter bytes field by @joshmoore in https://github.com/ome/omero-py/pull/230
fix logging attribute error by @tlambert03 in https://github.com/ome/omero-py/pull/226
bin/omero entrypoint by @manics in https://github.com/ome/omero-py/pull/229
import --fetch-jars by @manics in https://github.com/ome/omero-py/pull/162
Tox: Python 3.8, use travis bionic ice-py wheels by @manics in https://github.com/ome/omero-py/pull/232
Update release paragraph to mention downstream conda repository by @sbesson in https://github.com/ome/omero-py/pull/234
Import logprefix by @sbesson in https://github.com/ome/omero-py/pull/238
UTF-8 Fixes by @joshmoore in https://github.com/ome/omero-py/pull/224
Error handling when attempting to check log files by @chris-allan in https://github.com/ome/omero-py/pull/236
Use requests for HTTP/HTTPS calls in library by @chris-allan in https://github.com/ome/omero-py/pull/240
Remove long-deprecated module. by @mtbc in https://github.com/ome/omero-py/pull/237
Adds optional extra args to the util by @glyg in https://github.com/ome/omero-py/pull/241
fs usage: don't overwrite size (Fix #243) by @joshmoore in https://github.com/ome/omero-py/pull/245
Link to source on pypi homepage by @manics in https://github.com/ome/omero-py/pull/247
admin.py: optionally check for system manager environment variable by @manics in https://github.com/ome/omero-py/pull/246
Always marshal tile metadata on presence of pyramid by @chris-allan in https://github.com/ome/omero-py/pull/239
Use OS specific application directories instead of ~/omero by @manics in https://github.com/ome/omero-py/pull/242
Deprecate duplicate plugin by @sbesson in https://github.com/ome/omero-py/pull/249
Add support for mutliple Ice TLS protocols by @jburel in https://github.com/ome/omero-py/pull/251
Changelog notes for 5.8.0 by @manics in https://github.com/ome/omero-py/pull/248

New Contributors

@tlambert03 made their first contribution in https://github.com/ome/omero-py/pull/226
@glyg made their first contribution in https://github.com/ome/omero-py/pull/241

Full Changelog: https://github.com/ome/omero-py/compare/v5.7.1...v5.8.0

- Python
Published by sbesson 9 months ago

omero-py - v5.7.1

What's Changed

Update README release commands to sign release tags by @sbesson in https://github.com/ome/omero-py/pull/221
import plugin: append logs for bulk import rather than overwriting by @sbesson in https://github.com/ome/omero-py/pull/223

Full Changelog: https://github.com/ome/omero-py/compare/v5.7.0...v5.7.1

- Python
Published by sbesson 9 months ago

omero-py - v5.7.0

What's Changed

Remove pytest-sugar (incompatible pytest change) by @manics in https://github.com/ome/omero-py/pull/198
cli: don't unset ICE_CONFIG (fix #191) by @joshmoore in https://github.com/ome/omero-py/pull/193
Windows: require pywin32 by @manics in https://github.com/ome/omero-py/pull/203
omero.scripts: prepare scripts for use of CLI by @joshmoore in https://github.com/ome/omero-py/pull/186
Ignore owner when checking omero.data.dir is accessible by @manics in https://github.com/ome/omero-py/pull/208
Adjust help text for CLI import. by @mtbc in https://github.com/ome/omero-py/pull/211
Convert HTTP request JSON content from bytes to string. by @mtbc in https://github.com/ome/omero-py/pull/213
Attempt to fix Travis builds by @manics in https://github.com/ome/omero-py/pull/216
Chown gateway by @will-moore in https://github.com/ome/omero-py/pull/195
Add Python 3.5 handling for download writing file chunks. by @mtbc in https://github.com/ome/omero-py/pull/215
Warn if omero.db.poolsize is not set. by @mtbc in https://github.com/ome/omero-py/pull/218
admin diagnostics: show BF (and optionally other) jar versions by @manics in https://github.com/ome/omero-py/pull/188
api experimenters groups by @will-moore in https://github.com/ome/omero-py/pull/196
Update changelog for 5.7.0 by @will-moore in https://github.com/ome/omero-py/pull/220

Full Changelog: https://github.com/ome/omero-py/compare/v5.6.2...v5.7.0

- Python
Published by sbesson 9 months ago

omero-py - v5.6.2

What's Changed

Get file size for download from the RawFileStore instead of the DB by @kkoz in https://github.com/ome/omero-py/pull/181
List preferred conda installation first by @dominikl in https://github.com/ome/omero-py/pull/190
Use get_error for 'fs usage' failures (fix #187) by @joshmoore in https://github.com/ome/omero-py/pull/192
processor: set OMERODIR by @joshmoore in https://github.com/ome/omero-py/pull/197
config: Escape quotes in Default: section by @joshmoore in https://github.com/ome/omero-py/pull/185

New Contributors

@dominikl made their first contribution in https://github.com/ome/omero-py/pull/190

Full Changelog: https://github.com/ome/omero-py/compare/v5.6.1...v5.6.2

- Python
Published by sbesson 9 months ago

omero-py - v5.6.1

What's Changed

CmdError: implement str by @joshmoore in https://github.com/ome/omero-py/pull/151
fix doc by @jburel in https://github.com/ome/omero-py/pull/170
tables: call delete callback by @joshmoore in https://github.com/ome/omero-py/pull/152
travis jobs: enable Windows by @joshmoore in https://github.com/ome/omero-py/pull/134
omero db password should be a string by @manics in https://github.com/ome/omero-py/pull/175
Improve PyYAML error message by @joshmoore in https://github.com/ome/omero-py/pull/177
Extend output of 'omero version' by @joshmoore in https://github.com/ome/omero-py/pull/176
Add show-uuid option to sessions who by @chris-allan in https://github.com/ome/omero-py/pull/174
Update changelog and version for 5.6.1 by @manics in https://github.com/ome/omero-py/pull/182

Full Changelog: https://github.com/ome/omero-py/compare/v5.6.0...v5.6.1

- Python
Published by sbesson 9 months ago

omero-py - v5.6.0

API Changes

omero.gateway.FileAnnotationWrapper.getFileInChunks returns bytes
omero.gateway.ImageWrapper.exportOmeTiff returns bytes
omero.gateway.BlitzGateawy.createOriginalFileFromFileObj takes BytesIO
several return values should now be wrapped by BytesIO:
- image.renderSplitChannel()
- image.renderBirdsEyeView()
- image.renderJpegRegion()
- image.renderJpeg()
rlong instances now require explicit mapping:
- omero_type(longValue) defaults to rint
- omero.rtypes.wrap(longValue) defaults to rint

What's Changed

remove test/unit/clitest/reference_templates by @manics in https://github.com/ome/omero-py/pull/26
Py3 (1) by @joshmoore in https://github.com/ome/omero-py/pull/19
More py3 test fixes by @will-moore in https://github.com/ome/omero-py/pull/31
More unit tests by @manics in https://github.com/ome/omero-py/pull/34
tables: fix table creation (string issues) by @joshmoore in https://github.com/ome/omero-py/pull/37
Test natively in travis instead of docker by @manics in https://github.com/ome/omero-py/pull/36
Allow OMERO.py to connect to OMERO websockets with chained SSL certs by @manics in https://github.com/ome/omero-py/pull/18
scripts: fix script launching (string issues) by @joshmoore in https://github.com/ome/omero-py/pull/38
More unit tests by @manics in https://github.com/ome/omero-py/pull/39
sessions by @jburel in https://github.com/ome/omero-py/pull/43
strictness fixes (tables) by @joshmoore in https://github.com/ome/omero-py/pull/45
setup.py: devtarget command to symlink src into target by @manics in https://github.com/ome/omero-py/pull/33
BaseClient.upload: accept str as well by @joshmoore in https://github.com/ome/omero-py/pull/49
Use nativestr in scriptutils.download_plane() by @sbesson in https://github.com/ome/omero-py/pull/47
Mox by @jburel in https://github.com/ome/omero-py/pull/46
Use sys.excinfo rather than _traceback__ by @joshmoore in https://github.com/ome/omero-py/pull/50
processor: better group wrapping by @joshmoore in https://github.com/ome/omero-py/pull/51
Remove PYTHONPATH from tox.ini by @manics in https://github.com/ome/omero-py/pull/53
Readme dev setup instructions by @manics in https://github.com/ome/omero-py/pull/55
get-user by @jburel in https://github.com/ome/omero-py/pull/52
Py3 sychronization by @joshmoore in https://github.com/ome/omero-py/pull/48
Update populate_metadata utility classes following the code futurization by @sbesson in https://github.com/ome/omero-py/pull/60
Output by @jburel in https://github.com/ome/omero-py/pull/57
Py3 webclient by @will-moore in https://github.com/ome/omero-py/pull/64
Use ImportError instead of ModuleNotFoundError. by @mtbc in https://github.com/ome/omero-py/pull/68
unit test by @jburel in https://github.com/ome/omero-py/pull/71
py3: script by @jburel in https://github.com/ome/omero-py/pull/83
Fix ome.conditions.ResourceError in createtestimage by @will-moore in https://github.com/ome/omero-py/pull/81
diagnotics output by @jburel in https://github.com/ome/omero-py/pull/65
py3: fs plugin + testlib by @jburel in https://github.com/ome/omero-py/pull/72
Fix testrepository/TestRecursiveDelete/testdir by @will-moore in https://github.com/ome/omero-py/pull/76
Test py 3.7 in travis by @manics in https://github.com/ome/omero-py/pull/80
py3: processor.py by @jburel in https://github.com/ome/omero-py/pull/78
Py3 script by @jburel in https://github.com/ome/omero-py/pull/74
clients.py: fix args array by @joshmoore in https://github.com/ome/omero-py/pull/79
Py3 admin by @jburel in https://github.com/ome/omero-py/pull/73
scriptstest testscriptutils fixes by @will-moore in https://github.com/ome/omero-py/pull/85
plugins: fs by @jburel in https://github.com/ome/omero-py/pull/87
gateway: tiles by @jburel in https://github.com/ome/omero-py/pull/89
test: testdb_create by @jburel in https://github.com/ome/omero-py/pull/91
fix test_search.testSearchObjects by @will-moore in https://github.com/ome/omero-py/pull/92
Py3: upgrade message by @jburel in https://github.com/ome/omero-py/pull/70
Fix fixclitest.testdownload handle std.out by @will-moore in https://github.com/ome/omero-py/pull/88
clients: handle unicode args (py2) by @joshmoore in https://github.com/ome/omero-py/pull/96
rtypes: use past.builtins.long by @joshmoore in https://github.com/ome/omero-py/pull/97
fix test api wells listChildren by @will-moore in https://github.com/ome/omero-py/pull/98
Output diagnostics 2 by @jburel in https://github.com/ome/omero-py/pull/94
Fix gatewaytest.test image by @will-moore in https://github.com/ome/omero-py/pull/90
Fix gatewaytest testChannelWavelengthUnits by @will-moore in https://github.com/ome/omero-py/pull/75
plugins: obj by @jburel in https://github.com/ome/omero-py/pull/86
populate-roi by @jburel in https://github.com/ome/omero-py/pull/95
Tables metadata: treat int and long as long by @manics in https://github.com/ome/omero-py/pull/99
Tables: fix arguments to Ice by @joshmoore in https://github.com/ome/omero-py/pull/104
Convert tables v1 version to string by @manics in https://github.com/ome/omero-py/pull/105
fix testDeleteObjectDirect() by @will-moore in https://github.com/ome/omero-py/pull/106
Include python executable parent PATH in call() by @manics in https://github.com/ome/omero-py/pull/107
fix metadata.testpydicttext by @will-moore in https://github.com/ome/omero-py/pull/93
Fix file_ann.getFileInChunks() - start with b'' by @will-moore in https://github.com/ome/omero-py/pull/69
add skeleton change log file by @mtbc in https://github.com/ome/omero-py/pull/66
tables: map metadata bytes to strings by @joshmoore in https://github.com/ome/omero-py/pull/113
db: read and write utf-8 by @manics in https://github.com/ome/omero-py/pull/110
Handle getObjects(attributes={id:ID} as long by @will-moore in https://github.com/ome/omero-py/pull/100
changelog: list breaking changes by @joshmoore in https://github.com/ome/omero-py/pull/125
pyinotify: python 3 fixes by @joshmoore in https://github.com/ome/omero-py/pull/119
batch annotate file fix by @will-moore in https://github.com/ome/omero-py/pull/127
omero-py requires Pillow by @will-moore in https://github.com/ome/omero-py/pull/128
Move path.py to omero_ext by @joshmoore in https://github.com/ome/omero-py/pull/123
Activate all tests by @joshmoore in https://github.com/ome/omero-py/pull/122
Deprecated CLI plugins by @sbesson in https://github.com/ome/omero-py/pull/124
config_parser: further futurize by @joshmoore in https://github.com/ome/omero-py/pull/130
setup.py: windows builds by @joshmoore in https://github.com/ome/omero-py/pull/132
config xml in etc grid by @will-moore in https://github.com/ome/omero-py/pull/14
admin.py: handle errors in getdirsize by @joshmoore in https://github.com/ome/omero-py/pull/135
remove hdfstorageV1 (fix #40) by @joshmoore in https://github.com/ome/omero-py/pull/136
omero load --glob by @manics in https://github.com/ome/omero-py/pull/137
Disable new testLoadGlob when OMERODIR not set by @manics in https://github.com/ome/omero-py/pull/140
Retry flakey tests up to 5 times by @manics in https://github.com/ome/omero-py/pull/144
Fix tables StringColumn unicode by @manics in https://github.com/ome/omero-py/pull/143
Add numpy to requirements in setup.py by @will-moore in https://github.com/ome/omero-py/pull/139
Readme update by @will-moore in https://github.com/ome/omero-py/pull/146
omero.client ensure args is not None by @manics in https://github.com/ome/omero-py/pull/149
processor: pass locale to subprocesses by @joshmoore in https://github.com/ome/omero-py/pull/150
Ignore OMERO_HOME in omero with warning by @will-moore in https://github.com/ome/omero-py/pull/148
Bump to blitz 5.5.5 by @joshmoore in https://github.com/ome/omero-py/pull/158
Reenable testLoadGlob by @manics in https://github.com/ome/omero-py/pull/141
Remove use and docs for bin/omero by @joshmoore in https://github.com/ome/omero-py/pull/157
Changelog 5.6.0 by @will-moore in https://github.com/ome/omero-py/pull/163
StringColumn: Handle all encoding inside class by @manics in https://github.com/ome/omero-py/pull/145
Unpin pytest<3 by @joshmoore in https://github.com/ome/omero-py/pull/165
adjust spelling in changelog by @mtbc in https://github.com/ome/omero-py/pull/164
Link all changelog PRs by @manics in https://github.com/ome/omero-py/pull/166
add conda snippet by @jburel in https://github.com/ome/omero-py/pull/168
5.6 cleanup by @joshmoore in https://github.com/ome/omero-py/pull/169

Full Changelog: https://github.com/ome/omero-py/compare/v5.5.1...v5.6.0

- Python
Published by sbesson 9 months ago

omero-py - v5.21.0

This release allows OMERO.py to work with Numpy 2.3.0 which includes backward-incompatible removal of deprecated APIs - see https://numpy.org/doc/stable/release/2.3.0-notes.html#expired-deprecations.

What's Changed

Add fileset folder creation by @Rdornier in https://github.com/ome/omero-py/pull/427
getObject() and getExternalInfo() load externalInfo by @will-moore in https://github.com/ome/omero-py/pull/453
Replace to/fromstring by to/frombytes by @jburel in https://github.com/ome/omero-py/pull/461
omero.testlib: rename testdir utility as createmanaged_dir by @sbesson in https://github.com/ome/omero-py/pull/460

New Contributors

@Rdornier made their first contribution in https://github.com/ome/omero-py/pull/427

Full Changelog: https://github.com/ome/omero-py/compare/v5.20.0...v5.21.0

- Python
Published by sbesson 9 months ago

omero-py - v5.20.0

What's Changed

errors: use raise_error from cli plugins by @joshmoore in https://github.com/ome/omero-py/pull/266
Relax numpy<2 capping by @sbesson in https://github.com/ome/omero-py/pull/445
Pytest warning fixes by @sbesson in https://github.com/ome/omero-py/pull/457
omero admin jvmcfg: remove MaxPermSize option by @sbesson in https://github.com/ome/omero-py/pull/458
Numpy pixels type by @will-moore in https://github.com/ome/omero-py/pull/387

Full Changelog: https://github.com/ome/omero-py/compare/v5.19.8...v5.20.0

- Python
Published by sbesson 11 months ago

omero-py - v5.19.8

What's Changed

PyPA action: use release/v1 branch by @sbesson in https://github.com/ome/omero-py/pull/456

Full Changelog: https://github.com/ome/omero-py/compare/v5.19.7...v5.19.8

- Python
Published by sbesson 11 months ago

omero-py - v5.19.7

What's Changed

omero.util.populate_metadata: only log column types from HeaderResolver by @sbesson in https://github.com/ome/omero-py/pull/444
Fix #451 by @multimeric in https://github.com/ome/omero-py/pull/452
Change ignoreExeptions default to empty tuple by @jmuhlich in https://github.com/ome/omero-py/pull/447
Bump code generated omero-blitz-python dependency to version 5.8.1 by @sbesson in https://github.com/ome/omero-py/pull/455
Remove all usage of sha library in favor of hashlib by @sbesson in https://github.com/ome/omero-py/pull/454

New Contributors

@multimeric made their first contribution in https://github.com/ome/omero-py/pull/452

Full Changelog: https://github.com/ome/omero-py/compare/v5.19.6...v5.19.7

- Python
Published by sbesson 11 months ago

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