seqgendiff - v0.4.1

seqgendiff 0.4.1

• I added select_counts(), a function that will subsample the rows (genes) and columns (samples) of a RNA-seq count matrix. It is generally recommended that you do this subsampling each iteration of a simulation study so that your results do not depend on the specific structure of your data. The samples are just selected randomly. There are four different criteria for selecting the genes.
• I also added citation information. This will be updated after I submit the manuscript to bioRxiv.

- R
Published by dcgerard about 7 years ago

seqgendiff - v0.4.0

This is a major release. poisthin() is now defunct. The main functions are now thin_diff(), thin_2group(), thin_lib(), thin_gene(), and thin_all(). thin_diff() allows for general designs beyond the two-group model, and the rest of the functions are special cases of thin_diff().

- R
Published by dcgerard about 7 years ago

seqgendiff - v0.2.1

Updates: - poisthin() now allows for unequal sample sizes between the two groups using the group_prop argument. - The argument name in group_assign has been changed from "half" to "frac" to represent the more general assignment options available.

- R
Published by dcgerard over 7 years ago

seqgendiff - v0.2.0

Now allows for group assignment to be correlated with latent factors.

- R
Published by dcgerard over 7 years ago