genotype - Release 4.1.7

Update linting (#71)

Change

• Add Ruff, isort and update black

- Python
Published by clingen-sthlm over 2 years ago

genotype - Release 4.1.6

feat(codeowner) (#70)

Change

• Update codeowners

- Python
Published by clingen-sthlm over 2 years ago

genotype - Release 4.1.5

Added a check for user-defined sample_id before logging it. (#64)(patch)

Removed logging of sample_id from genotype - security update

- Python
Published by clingen-sthlm over 3 years ago

genotype - Release 4.1.4

Improved error message for multiple SNP variants found in fetch_snp (#62)

• Improved error message for multiple SNP variants found in fetch_snp

• black lint improvements

• Adhere to black (2)

• Removed file name from error msg, inteded way does not work using vcf.fname

• Added functionality to report on variants in a more concise manner in the error.

• Altered function return to comply to return type

• Esthetic changes in error message formatting.

• incorporated code improvement suggestions

• Refactored if statements. Changed string parsing to f-string in log.DEBUG()

• Added docstring to new function.

Co-authored-by: Christian Oertlin christian@n177-p153.eduroam.kth.se

- Python
Published by clingen-sthlm over 3 years ago

genotype - Release 4.1.3

feat(update): GitHub actions version (#60) (patch)

Changed

• Update GitHub actions version

- Python
Published by clingen-sthlm over 3 years ago

genotype - Release 4.1.2

Update DEPLOYMENT.md (#59) (patch)

Changed

• Update DEPLOYMENT.md for production

- Python
Published by clingen-sthlm over 3 years ago

genotype - Release 4.1.1

Update DEPLOYMENT.md (#56) (patch)

Chnaged

• Update deployments instructions
• Lock some python packages

- Python
Published by clingen-sthlm over 3 years ago

genotype - Release 4.1.0

Feat(CLI): List and inactivate users (#54) (minor)

Added:

• CLI to list users genotype list-users
• CLI to inactivate users genotype delete-user EMAIL

- Python
Published by clingen-sthlm over 4 years ago

genotype - Release 4.0.1

Version (#52) (patch)

Fixed

• Version locks

- Python
Published by clingen-sthlm almost 5 years ago

genotype - Release 4.0.0

Cgvm preparations #51 (major)

Added

• CI/CD actions and configs
• Dockerfile for app
• Removed clinical-db installation support

- Python
Published by clingen-sthlm almost 5 years ago