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phyg

Program to perform phylogenetic searches on general graphs with diverse data types

https://github.com/amnh/phyg

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
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    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (1.4%) to scientific vocabulary
Last synced: 7 months ago · JSON representation ·

Repository

Program to perform phylogenetic searches on general graphs with diverse data types

Basic Info
  • Host: GitHub
  • Owner: amnh
  • Language: Haskell
  • Default Branch: main
  • Homepage:
  • Size: 29.4 MB
Statistics
  • Stars: 8
  • Watchers: 6
  • Forks: 0
  • Open Issues: 20
  • Releases: 8
Created about 5 years ago · Last pushed 8 months ago
Metadata Files
Readme Citation

README.md

doc/README.md

Owner

  • Name: American Museum of Natural History
  • Login: amnh
  • Kind: organization

Citation (CITATION.cff) 

# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: 'PhylogeneticGraph (PhyG) '
message: >-
  If you use this software, please cite it using the
  metadata from this file.
type: software
authors:
  - given-names: Ward
    family-names: Wheeler
    email: wheeler@amnh.org
    affiliation: American Museum of Natural History
    orcid: 'https://orcid.org/0000-0001-6977-984X'
repository-code: 'https://github.com/amnh/PhyG'
url: 'https://github.com/amnh/PhyG'
repository-artifact: 'https://github.com/amnh/PhyG-Integration-Tests'
abstract: >-
  Phylogenetic Graph (PhyG) is a multi-platform program
  designed to produce phylogenetic graphs from input data
  and graphs via heuristic searching of general phylogenetic
  graph space. The bio-informatics framework libraries of
  the broader Phylogenetic Haskell Analytic Network Engine
  (PHANE) project are the foundation upon which PhyG is
  constructed. PhyG offers vast functionality, including the
  optimization of unaligned sequences, and the ability to
  implement search strategies such as random addition
  sequence, swapping, and tree fusing. Furthermore, PhyG can
  generate outputs in the form of implied alignments and
  graphical representations of cladograms and graphs. What
  sets PhyG apart from other phylogenetic analysis programs,
  is the extension to broader classes of input data and
  phylogenetic graphs. The phylogenetic graph inputs and
  outputs of PhyG include trees, as well as softwired and
  hardwired networks.
license: BSD-3-Clause

GitHub Events

Total
  • Create event: 7
  • Release event: 2
  • Issues event: 1
  • Watch event: 3
  • Delete event: 3
  • Push event: 233
Last Year
  • Create event: 7
  • Release event: 2
  • Issues event: 1
  • Watch event: 3
  • Delete event: 3
  • Push event: 233

Dependencies

.github/workflows/integration-test-suite.yaml actions
  • actions/cache v3 composite
  • actions/checkout v3 composite
  • dawidd6/action-send-mail v3 composite
  • haskell/actions/setup v2 composite
.github/workflows/integration-tests.yaml actions
  • actions/cache v3 composite
  • actions/checkout v3 composite
  • dawidd6/action-send-mail v3 composite
  • haskell/actions/setup v2 composite
PhyG.cabal hackage