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Recent Releases of rpy2

rpy2 -

- Python
Published by lgautier 7 months ago

rpy2 -

- Python
Published by lgautier 9 months ago

rpy2 - 3.6.0

Changelog: https://rpy2.github.io/doc/v3.6.x/html/changes.html#release-3-6-0

- Python
Published by lgautier 9 months ago

rpy2 -

- Python
Published by lgautier 10 months ago

rpy2 -

- Python
Published by lgautier about 1 year ago

rpy2 - v3.5.16

- Python
Published by lgautier almost 2 years ago

rpy2 - v3.5.15

- Python
Published by lgautier about 2 years ago

rpy2 -

- Python
Published by lgautier over 2 years ago

rpy2 - Release 3.5.13

```

Release 3.5.13

New features

  • R is setting a number of environment variables in a wrapper script. Those variables were not set by default by rpy2 and this could lead to issues (see issue #1033). The variables are now added to os.environ.

Bugs fixed

  • python -m rpy2.situation LD_LIBRARY_PATH could incorrectly truncate the value for LD_LIBRARY_PATH when the variable LD_LIBRARY_PATH is already defined.

Changes

  • The dependency on :mod:pytz, a deprecated package, was removed and replaced by a dependency to :mod:zoneinfo. If Python < 3.9 the package :mod:backports.zoneinfo is an added dependency.

  • The depency on :mod:tzlocal does no longer limit it to <5.0 (issue #1035).

  • Remove dependency on :mod:distutils in Python's standard library. That package is deprecated and removed in Python 3.12 (see https://peps.python.org/pep-0632/ and issue #1040). ```

- Python
Published by lgautier over 2 years ago

rpy2 -

Release 3.5.12

New features

  • :func:rpy2.rinterface.evalr_expr_with_visible to evaluate an expression and return the visibility status of the value returned.

  • More events in the intialization and termination of an embedded R logged by :mod:rpy2.rinterface_lib.embedded.logger at INFO and DEBUG levels.

  • :meth:rpy2.robjects.R.__call__ has 2 named arguments "visible" and "printrwarnings" to handle R "invisible" results and print R warnings at the end of the evaluation. Invisible results happen when doing rpy2.robjects.r("x <- 1"). R will return the value of x "invisibly". The default are invisible is True and print_r_warnings is True.

Bugs fixed

  • "R magic" cells are now show R warnings at the end of the evaluation of an R cell (#issue 226).

Changes

  • Evaluating a string as R code using :meth:rpy2.robjects.R.__call__ (e.g., rpy2.robjects.r("1+2")) now shows R warnings at the end of the evaluation by default.

  • :meth:rpy2.robjects.R.__call__ returns the results invisibly by default (see section "New features" for this release).

- Python
Published by lgautier almost 3 years ago

rpy2 - Release 3.5.11

Release 3.5.11

New features

  • :class:pandas.Categorical objects are now converted to R factor objects.

Bugs fixed

  • :mod:pandas 2.0 makes API-breaking changes that made conversion fail (issue #1013).

  • The default converter for R magic was dropping R factors to :mod:numpy arrays of integers rather than convert them to pandas :class:Category (issue #1010).

Changes

  • The fix for issue #1010 (see above) changes the numpy conversion for R factors. It returns an arrays with the level factors rather than the integer codes for the levels.

  • :func:rpy2.rojects.pandas2ri.py2rpy_categoryseries raises a :class:DeprecationWarning.

- Python
Published by lgautier almost 3 years ago

rpy2 -

Release 3.5.10

New features

  • :mod:rpy2.situation reports cffi interface type information.

  • The ipython/jupyter R magic can now have jpeg as a default graphics format for static figures in addition to png and svg.

Bugs fixed

  • Building the path to the R shared library was incorrectly using the output of R CMD config LIBnn (issue #982).

  • R started raising warnings when calling formals on BUILTINSXP R objects. Internal functions in :mod:rpy.robjects.functions calling formals no longer propagate the warnings.

- Python
Published by lgautier almost 3 years ago

rpy2 - v3.5.9.

New features

  • Type hints in rpy2 are now checked with mypy.

Bugs fixed

  • Building the path to the R shared library was incorrectly using the output of R CMD config LIBnn (issue #982).

  • R started raising warnings when calling formals on SPECIALSXP R objects. Internal functions rpy.robjects.functions calling formals no longer propagate the warnings.

  • The numpy converter was not turning NA_character_ into None (issue #979).

  • rpy2.situation included an eager import rpy2 that could cause a version mismatch error with some build/install toolchain (issue #984). The import is now lazy/delayed.

  • Installation targets pandas, all, and test now specify pandas>=1.2.0 (which should limit frequencies of issues like #998).

Changes

  • rpy2.robjects.conversion.Converter objects are no longer functioning context managers. An exception is now raised when trying to use it that way. The feature was introduced with rpy2-3.5.7 but it does not guarantee the locality of a context manager and can result in permanently changed conversion rules. The method rpy2.robjects.conversion.Converter.context should be used instead.

- Python
Published by lgautier almost 3 years ago

rpy2 - Release 3.5.8

Release 3.5.8

New features

  • Default value for the interactivity status of the embedded R as initialization is now a private variable _DEFAULT_R_INTERACTIVE in :mod:rpy2.rinterface_lib.embedded.

Bugs fixed

  • :func:rpy2.rinterface.initr_checkenv (aliased to :func:rpy2.rinterface.initr) did not include initialization parameters for interactive, _want_setcallbacks, and _c_stack_limit (issue #976).

  • The numpy converter was not listing R objects of type CHARSXP as vectors. This make R NA_character_ values wrapped in rpy2 Python objects to be passed as-is (issue #983).

- Python
Published by lgautier about 3 years ago

rpy2 - Release 3.5.7

Changelog here: https://github.com/rpy2/rpy2/blob/RELEASE35_7/NEWS

- Python
Published by lgautier about 3 years ago

rpy2 - v3.5.6

- Python
Published by lgautier over 3 years ago

rpy2 - v3.5.5

- Python
Published by lgautier over 3 years ago

rpy2 -

- Python
Published by lgautier over 3 years ago

rpy2 -

- Python
Published by lgautier over 3 years ago

rpy2 -

- Python
Published by lgautier almost 4 years ago

rpy2 - rpy2-3.5.1

- Python
Published by lgautier almost 4 years ago

rpy2 - rpy2-3.5.0

- Python
Published by lgautier almost 4 years ago