r-rpact

rpact: Confirmatory Adaptive Clinical Trial Design and Analysis

https://github.com/rpact-com/rpact

Science Score: 39.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
    Found 4 DOI reference(s) in README
  • Academic publication links
  • Committers with academic emails
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (17.7%) to scientific vocabulary

Keywords

adaptive-design analysis clinical-trials count-data group-sequential-designs power-calculation r sample-size-calculation simulation validated
Last synced: 6 months ago · JSON representation

Repository

rpact: Confirmatory Adaptive Clinical Trial Design and Analysis

Basic Info
Statistics
  • Stars: 28
  • Watchers: 5
  • Forks: 6
  • Open Issues: 3
  • Releases: 11
Topics
adaptive-design analysis clinical-trials count-data group-sequential-designs power-calculation r sample-size-calculation simulation validated
Created over 3 years ago · Last pushed 6 months ago
Metadata Files
Readme Changelog

README.Rmd

---
output:
  md_document:
    variant: gfm
---

```{r, echo = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```

 
[![](https://www.r-pkg.org/badges/version/rpact)](https://cran.r-project.org/package=rpact) 
[![R-CMD-check](https://github.com/rpact-com/rpact/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/rpact-com/rpact/actions/workflows/R-CMD-check.yaml) 
[![Total downloads](https://cranlogs.r-pkg.org/badges/grand-total/rpact?color=blue)](https://CRAN.R-project.org/package=rpact) 
[![Monthly downloads](https://cranlogs.r-pkg.org/badges/rpact?color=blue)](https://CRAN.R-project.org/package=rpact) 
[![Lifecycle: stable](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://lifecycle.r-lib.org/articles/stages.html#stable) 
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[![](https://img.shields.io/badge/DOI-10.1007/978--3--319--32562--0-yellow.svg?logo=doi)](https://doi.org/10.1007/978-3-319-32562-0) 
[![](https://img.shields.io/badge/RPACT-Cloud-blue.svg?logo=r)](https://rpact.shinyapps.io/cloud)
[![](https://img.shields.io/badge/RPACT-Connect-669999.svg?labelColor=336699)](https://rpact.shinyapps.io/connect)
 

# rpact 

Confirmatory Adaptive Clinical Trial Design, Simulation, and Analysis.

## Functional Range

*	Fixed sample design and designs with interim analysis stages
*	Sample size and power calculation for
    +	means (continuous endpoint)
    +	rates (binary endpoint)
    +	survival trials with flexible recruitment and survival time options
    +	count data 
*	Simulation tool for means, rates, survival data, and count data
    +	Assessment of adaptive sample size/event number recalculations based on
        conditional power
    +   Assessment of treatment selection strategies in multi-arm trials
*	Adaptive analysis of means, rates, and survival data
*	Adaptive designs and analysis for multi-arm trials
*	Adaptive analysis and simulation tools for enrichment design testing means,
    rates, and hazard ratios
*	Automatic boundary recalculations during the trial for analysis with alpha
    spending approach, including under- and over-running

## Installation

Install the latest CRAN release via

```{r installation_cran, eval=FALSE, include=TRUE, echo=TRUE, results='hide'}
install.packages("rpact")
```

### Development version

To use a feature from the development version, you can
install the development version of rpact from
[GitHub](https://github.com/rpact-com/rpact).

```{r installation_github, eval=FALSE, include=TRUE, echo=TRUE, results='hide'}
# install.packages("pak")
pak::pak("rpact-com/rpact")
```

## Documentation

The documentation is hosted at [www.rpact.org](https://www.rpact.org)

## Vignettes

The vignettes are hosted at
[www.rpact.org/vignettes](https://www.rpact.org/vignettes/)

## RPACT Connect 

Connecting you to insights, downloads, and premium support:
[connect.rpact.com](https://rpact.shinyapps.io/connect)

## The RPACT User Group

The *rpact project* has an active user group consisting of decision-makers and
users from the pharmaceutical industry and CROs, who meet regularly
and, e.g., discuss best practices.

We invite you to be part of the *RPACT User Group*: benefit from know-how, shape
open source development in Pharma!

## Use on corporate computer systems

Please [contact](https://www.rpact.com/contact/) us to learn how to use `rpact`
on FDA/GxP-compliant validated corporate computer systems and how to get a copy
of the formal validation documentation that is customized and licensed for
exclusive use by your company, e.g., to fulfill regulatory requirements.
The validation documentation contains the personal access data for performing
the installation qualification with `testPackage()`.

> [www.rpact.com/contact](https://www.rpact.com/contact/)

# About

* **rpact** is a comprehensive validated^[The rpact validation documentation is
  available exclusively for our customers and supporting members. For more
  information visit
  [www.rpact.com/services/sla](https://www.rpact.com/services/service-level-agreement/)] R package
  for clinical research which
    + enables the design and analysis of confirmatory adaptive group sequential
      designs
    + is a powerful sample size calculator
    + is a free of charge open-source software licensed under
      [LGPL-3](https://cran.r-project.org/web/licenses/LGPL-3)
    + particularly, implements the methods described in the recent monograph by
      [Wassmer and Brannath (2016)](https://doi.org/10.1007%2F978-3-319-32562-0)

> For more information please visit [www.rpact.org](https://www.rpact.org)

* **RPACT** is a company which offers
    + enterprise R/Shiny software development services 
    + technical support for the
      [rpact](https://cran.r-project.org/package=rpact) package
    + consultancy and user training for scientists using R
    + validated software solutions and R package development for clinical
      research

> For more information please visit [www.rpact.com](https://www.rpact.com)

Owner

  • Name: RPACT
  • Login: rpact-com
  • Kind: organization
  • Email: info@rpact.com
  • Location: Germany

R Programming for Adaptive Clinical Trials

GitHub Events

Total
  • Create event: 8
  • Release event: 2
  • Issues event: 31
  • Watch event: 3
  • Issue comment event: 35
  • Member event: 1
  • Push event: 102
  • Pull request review event: 12
  • Pull request review comment event: 21
  • Pull request event: 29
  • Fork event: 1
Last Year
  • Create event: 8
  • Release event: 2
  • Issues event: 31
  • Watch event: 3
  • Issue comment event: 35
  • Member event: 1
  • Push event: 102
  • Pull request review event: 12
  • Pull request review comment event: 21
  • Pull request event: 29
  • Fork event: 1

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 29
  • Total Committers: 2
  • Avg Commits per committer: 14.5
  • Development Distribution Score (DDS): 0.069
Past Year
  • Commits: 26
  • Committers: 2
  • Avg Commits per committer: 13.0
  • Development Distribution Score (DDS): 0.038
Top Committers
Name Email Commits
Friedrich Pahlke f****e@r****m 27
Friedrich Pahlke 4****e 2
Committer Domains (Top 20 + Academic)

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 44
  • Total pull requests: 50
  • Average time to close issues: 18 days
  • Average time to close pull requests: 1 day
  • Total issue authors: 20
  • Total pull request authors: 4
  • Average comments per issue: 1.45
  • Average comments per pull request: 0.12
  • Merged pull requests: 42
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 19
  • Pull requests: 24
  • Average time to close issues: 12 days
  • Average time to close pull requests: 2 days
  • Issue authors: 12
  • Pull request authors: 2
  • Average comments per issue: 1.53
  • Average comments per pull request: 0.17
  • Merged pull requests: 19
  • Bot issues: 0
  • Bot pull requests: 0
Top Authors
Issue Authors
  • fpahlke (12)
  • gwassmer (5)
  • grlm1 (4)
  • wolbersm (4)
  • gravesti (2)
  • danielinteractive (2)
  • TimHesterberg (2)
  • pmahling (1)
  • vinwol (1)
  • liuxiangyu127 (1)
  • wyf88 (1)
  • adcascone (1)
  • TomParke (1)
  • rojasrodriguez (1)
  • PuzzledFace-Astellas (1)
Pull Request Authors
  • fpahlke (62)
  • tilljensen (5)
  • xinzhn (2)
  • danielinteractive (2)
Top Labels
Issue Labels
enhancement (11) bug (7) question (5) wontfix (1)
Pull Request Labels
enhancement (1)

Packages

  • Total packages: 1
  • Total downloads: unknown
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 2
conda-forge.org: r-rpact
  • Homepage: https://www.rpact.com
  • License: LGPL-3.0-only
  • Latest release: 3.3.2
    published over 3 years ago
  • Versions: 2
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent repos count: 34.0%
Average: 50.5%
Dependent packages count: 51.2%
Stargazers count: 55.7%
Forks count: 61.1%
Last synced: 6 months ago

Dependencies

DESCRIPTION cran
  • R >= 3.5.0 depends
  • Rcpp >= 1.0.0 imports
  • graphics * imports
  • methods * imports
  • stats * imports
  • tools * imports
  • utils * imports
  • ggplot2 >= 2.2.0 suggests
  • knitr >= 1.19 suggests
  • mnormt >=1.5 suggests
  • parallel * suggests
  • rmarkdown >= 1.10 suggests
  • testthat >= 2.0.0 suggests
.github/workflows/R-CMD-check.yaml actions
  • actions/checkout v3 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/pkgdown.yaml actions
  • JamesIves/github-pages-deploy-action v4.4.1 composite
  • actions/checkout v3 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite