r-rpact
rpact: Confirmatory Adaptive Clinical Trial Design and Analysis
Science Score: 39.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 4 DOI reference(s) in README -
○Academic publication links
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○Committers with academic emails
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (17.7%) to scientific vocabulary
Keywords
adaptive-design
analysis
clinical-trials
count-data
group-sequential-designs
power-calculation
r
sample-size-calculation
simulation
validated
Last synced: 6 months ago
·
JSON representation
Repository
rpact: Confirmatory Adaptive Clinical Trial Design and Analysis
Basic Info
- Host: GitHub
- Owner: rpact-com
- Language: R
- Default Branch: main
- Homepage: https://rpact-com.github.io/rpact/
- Size: 22.1 MB
Statistics
- Stars: 28
- Watchers: 5
- Forks: 6
- Open Issues: 3
- Releases: 11
Topics
adaptive-design
analysis
clinical-trials
count-data
group-sequential-designs
power-calculation
r
sample-size-calculation
simulation
validated
Created over 3 years ago
· Last pushed 6 months ago
Metadata Files
Readme
Changelog
README.Rmd
---
output:
md_document:
variant: gfm
---
```{r, echo = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
fig.path = "man/figures/README-",
out.width = "100%"
)
```
[](https://cran.r-project.org/package=rpact)
[](https://github.com/rpact-com/rpact/actions/workflows/R-CMD-check.yaml)
[](https://CRAN.R-project.org/package=rpact)
[](https://CRAN.R-project.org/package=rpact)
[](https://lifecycle.r-lib.org/articles/stages.html#stable)
[](https://www.gnu.org/licenses/lgpl-3.0)
[](https://app.codecov.io/gh/rpact-com/rpact?branch=main)
[](https://doi.org/10.1007/978-3-319-32562-0)
[](https://rpact.shinyapps.io/cloud)
[](https://rpact.shinyapps.io/connect)
# rpact
Confirmatory Adaptive Clinical Trial Design, Simulation, and Analysis.
## Functional Range
* Fixed sample design and designs with interim analysis stages
* Sample size and power calculation for
+ means (continuous endpoint)
+ rates (binary endpoint)
+ survival trials with flexible recruitment and survival time options
+ count data
* Simulation tool for means, rates, survival data, and count data
+ Assessment of adaptive sample size/event number recalculations based on
conditional power
+ Assessment of treatment selection strategies in multi-arm trials
* Adaptive analysis of means, rates, and survival data
* Adaptive designs and analysis for multi-arm trials
* Adaptive analysis and simulation tools for enrichment design testing means,
rates, and hazard ratios
* Automatic boundary recalculations during the trial for analysis with alpha
spending approach, including under- and over-running
## Installation
Install the latest CRAN release via
```{r installation_cran, eval=FALSE, include=TRUE, echo=TRUE, results='hide'}
install.packages("rpact")
```
### Development version
To use a feature from the development version, you can
install the development version of rpact from
[GitHub](https://github.com/rpact-com/rpact).
```{r installation_github, eval=FALSE, include=TRUE, echo=TRUE, results='hide'}
# install.packages("pak")
pak::pak("rpact-com/rpact")
```
## Documentation
The documentation is hosted at [www.rpact.org](https://www.rpact.org)
## Vignettes
The vignettes are hosted at
[www.rpact.org/vignettes](https://www.rpact.org/vignettes/)
## RPACT Connect
Connecting you to insights, downloads, and premium support:
[connect.rpact.com](https://rpact.shinyapps.io/connect)
## The RPACT User Group
The *rpact project* has an active user group consisting of decision-makers and
users from the pharmaceutical industry and CROs, who meet regularly
and, e.g., discuss best practices.
We invite you to be part of the *RPACT User Group*: benefit from know-how, shape
open source development in Pharma!
## Use on corporate computer systems
Please [contact](https://www.rpact.com/contact/) us to learn how to use `rpact`
on FDA/GxP-compliant validated corporate computer systems and how to get a copy
of the formal validation documentation that is customized and licensed for
exclusive use by your company, e.g., to fulfill regulatory requirements.
The validation documentation contains the personal access data for performing
the installation qualification with `testPackage()`.
> [www.rpact.com/contact](https://www.rpact.com/contact/)
# About
* **rpact** is a comprehensive validated^[The rpact validation documentation is
available exclusively for our customers and supporting members. For more
information visit
[www.rpact.com/services/sla](https://www.rpact.com/services/service-level-agreement/)] R package
for clinical research which
+ enables the design and analysis of confirmatory adaptive group sequential
designs
+ is a powerful sample size calculator
+ is a free of charge open-source software licensed under
[LGPL-3](https://cran.r-project.org/web/licenses/LGPL-3)
+ particularly, implements the methods described in the recent monograph by
[Wassmer and Brannath (2016)](https://doi.org/10.1007%2F978-3-319-32562-0)
> For more information please visit [www.rpact.org](https://www.rpact.org)
* **RPACT** is a company which offers
+ enterprise R/Shiny software development services
+ technical support for the
[rpact](https://cran.r-project.org/package=rpact) package
+ consultancy and user training for scientists using R
+ validated software solutions and R package development for clinical
research
> For more information please visit [www.rpact.com](https://www.rpact.com)
Owner
- Name: RPACT
- Login: rpact-com
- Kind: organization
- Email: info@rpact.com
- Location: Germany
- Website: www.rpact.com
- Repositories: 2
- Profile: https://github.com/rpact-com
R Programming for Adaptive Clinical Trials
GitHub Events
Total
- Create event: 8
- Release event: 2
- Issues event: 31
- Watch event: 3
- Issue comment event: 35
- Member event: 1
- Push event: 102
- Pull request review event: 12
- Pull request review comment event: 21
- Pull request event: 29
- Fork event: 1
Last Year
- Create event: 8
- Release event: 2
- Issues event: 31
- Watch event: 3
- Issue comment event: 35
- Member event: 1
- Push event: 102
- Pull request review event: 12
- Pull request review comment event: 21
- Pull request event: 29
- Fork event: 1
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Friedrich Pahlke | f****e@r****m | 27 |
| Friedrich Pahlke | 4****e | 2 |
Committer Domains (Top 20 + Academic)
rpact.com: 1
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 44
- Total pull requests: 50
- Average time to close issues: 18 days
- Average time to close pull requests: 1 day
- Total issue authors: 20
- Total pull request authors: 4
- Average comments per issue: 1.45
- Average comments per pull request: 0.12
- Merged pull requests: 42
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 19
- Pull requests: 24
- Average time to close issues: 12 days
- Average time to close pull requests: 2 days
- Issue authors: 12
- Pull request authors: 2
- Average comments per issue: 1.53
- Average comments per pull request: 0.17
- Merged pull requests: 19
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- fpahlke (12)
- gwassmer (5)
- grlm1 (4)
- wolbersm (4)
- gravesti (2)
- danielinteractive (2)
- TimHesterberg (2)
- pmahling (1)
- vinwol (1)
- liuxiangyu127 (1)
- wyf88 (1)
- adcascone (1)
- TomParke (1)
- rojasrodriguez (1)
- PuzzledFace-Astellas (1)
Pull Request Authors
- fpahlke (62)
- tilljensen (5)
- xinzhn (2)
- danielinteractive (2)
Top Labels
Issue Labels
enhancement (11)
bug (7)
question (5)
wontfix (1)
Pull Request Labels
enhancement (1)
Packages
- Total packages: 1
- Total downloads: unknown
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 2
conda-forge.org: r-rpact
- Homepage: https://www.rpact.com
- License: LGPL-3.0-only
-
Latest release: 3.3.2
published over 3 years ago
Rankings
Dependent repos count: 34.0%
Average: 50.5%
Dependent packages count: 51.2%
Stargazers count: 55.7%
Forks count: 61.1%
Last synced:
6 months ago
Dependencies
DESCRIPTION
cran
- R >= 3.5.0 depends
- Rcpp >= 1.0.0 imports
- graphics * imports
- methods * imports
- stats * imports
- tools * imports
- utils * imports
- ggplot2 >= 2.2.0 suggests
- knitr >= 1.19 suggests
- mnormt >=1.5 suggests
- parallel * suggests
- rmarkdown >= 1.10 suggests
- testthat >= 2.0.0 suggests
.github/workflows/R-CMD-check.yaml
actions
- actions/checkout v3 composite
- r-lib/actions/check-r-package v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/pkgdown.yaml
actions
- JamesIves/github-pages-deploy-action v4.4.1 composite
- actions/checkout v3 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite