ipyvolume

3d plotting for Python in the Jupyter notebook based on IPython widgets using WebGL

Science Score: 10.0%

This score indicates how likely this project is to be science-related based on various indicators:

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CITATION.cff file
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codemeta.json file
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.zenodo.json file
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DOI references
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Academic publication links
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Committers with academic emails
1 of 45 committers (2.2%) from academic institutions
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Institutional organization owner
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (11.0%) to scientific vocabulary

Keywords

dataviz ipython-widget jupyter jupyter-notebook plotting python quiver rendering-3d-volumes scientific-visualization threejs virtual-reality visualisation volume-rendering webgl

Keywords from Contributors

closember notebook qt neuroimaging gtk tk wx neuroscience open-science plotly

Last synced: 6 months ago · JSON representation

Repository

3d plotting for Python in the Jupyter notebook based on IPython widgets using WebGL

Basic Info

Host: GitHub
Owner: widgetti
License: mit
Language: TypeScript
Default Branch: master
Homepage:
Size: 72.8 MB

Statistics

Stars: 1,961
Watchers: 54
Forks: 233
Open Issues: 212
Releases: 0

Topics

dataviz ipython-widget jupyter jupyter-notebook plotting python quiver rendering-3d-volumes scientific-visualization threejs virtual-reality visualisation volume-rendering webgl

Created about 9 years ago · Last pushed about 2 years ago

Metadata Files

Readme License Code of conduct

ipyvolume

Try out in mybinder:

3d plotting for Python in the Jupyter notebook based on IPython widgets using WebGL.

Ipyvolume currently can * Do (multi) volume rendering. * Create scatter plots (up to ~1 million glyphs). * Create quiver plots (like scatter, but with an arrow pointing in a particular direction). * Render isosurfaces. * Do lasso mouse selections. * Render in the Jupyter notebook, or create a standalone html page (or snippet to embed in your page). * Render in stereo, for virtual reality with Google Cardboard. * Animate in d3 style, for instance if the x coordinates or color of a scatter plots changes. * Animations / sequences, all scatter/quiver plot properties can be a list of arrays, which can represent time snapshots. * Stylable (although still basic) * Integrates with * ipywidgets for adding gui controls (sliders, button etc), see an example at the documentation homepage * bokeh by linking the selection * bqplot by linking the selection

Ipyvolume will probably, but not yet: * Render labels in latex. * Show a custom popup on hovering over a glyph.

Documentation

Documentation is generated at readthedocs:

Screencast demos

Animation

screencast

(see more at the documentation)

Volume rendering

screencast

Glyphs (quiver plots)

screencast quiver

Installation

If you want to use Jupyter Lab, please use version 3.0.

Using pip

Advice: Make sure you use conda or virtualenv. If you are not a root user and want to use the --user argument for pip, you expose the installation to all python environments, which is a bad practice, make sure you know what you are doing.

$ pip install ipyvolume

Conda/Anaconda

$ conda install -c conda-forge ipyvolume

Pre-notebook 5.3

If you are still using an old notebook version, ipyvolume and its dependend extension (widgetsnbextension) need to be enabled manually. If unsure, check which extensions are enabled:

$ jupyter nbextension list

If not enabled, enable them:

$ jupyter nbextension enable --py --sys-prefix ipyvolume $ jupyter nbextension enable --py --sys-prefix widgetsnbextension

Pip as user: (but really, do not do this)

You have been warned, do this only if you know what you are doing, this might hunt you in the future, and now is a good time to consider learning virtualenv or conda.

$ pip install ipyvolume --user $ jupyter nbextension enable --py --user ipyvolume $ jupyter nbextension enable --py --user widgetsnbextension

Developer installation

``` $ git clone https://github.com/maartenbreddels/ipyvolume.git $ cd ipyvolume $ pip install -e . notebook jupyterlab $ (cd js; npm run build) $ jupyter nbextension install --py --overwrite --symlink --sys-prefix ipyvolume $ jupyter nbextension enable --py --sys-prefix ipyvolume

for jupyterlab (>=3.0), symlink share/jupyter/labextensions/bqplot-image-gl

$ jupyter labextension develop . --overwrite ```

Developer workflow

Jupyter notebook (classical)

Note: There is never a need to restart the notebook server, nbextensions are picked up after a page reload.

Start this command: $ (cd js; npm run watch)

It will * Watch for changes in the sourcecode and run the typescript compiler for transpilation of the src dir to the lib dir. * Watch the lib dir, and webpack will build (among other things), ROOT/ipyvolume/static/index.js.

Refresh the page.

Owner

Name: widgetti
Login: widgetti
Kind: organization

Website: http://widgetti.io/
Repositories: 12
Profile: https://github.com/widgetti

GitHub Events

Total

Issues event: 1
Watch event: 30
Issue comment event: 7
Pull request event: 2
Fork event: 5

Last Year

Issues event: 1
Watch event: 30
Issue comment event: 7
Pull request event: 2
Fork event: 5

Committers

Last synced: 8 months ago

All Time

Total Commits: 928
Total Committers: 45
Avg Commits per committer: 20.622
Development Distribution Score (DDS): 0.134

Past Year

Commits: 0
Committers: 0
Avg Commits per committer: 0.0
Development Distribution Score (DDS): 0.0

Top Committers

Name	Email	Commits
maartenbreddels	m**s@g**m	804
GenevieveBuckley	3****y	24
Arbona	j**a@g**m	20
Casper van Leeuwen	c**n@s**l	11
Chris Sewell	c**l@h**m	6
Guillaume Gay	g**e@d**m	6
Oleh Kozynets	O****S	6
Jeremy Tuloup	j**p@g**m	4
Satrajit Ghosh	s**h@g**m	3
Matthias Geier	M**r@g**m	3
Angus Hollands	g**5@g**m	3
Sylvain Corlay	s**y@g**m	2
Oliver Evans	o**6@g**m	2
Chris Holdgraf	c**f@g**m	2
rpanai	r**i@s**t	2
Jean-Rémi KING	j**g@g**m	1
Josh Meyers	j**4@g**m	1
Karthikeyan Singaravelan	t**i@g**m	1
Kevin Mader	k****r	1
Marc Garcia	g**c@g**m	1
Mathieu	m****1	1
Matt McCormick	m**k@k**m	1
Todd	t**8@g**m	1
Vidar Tonaas Fauske	v**f@g**m	1
WANG Aiyong	g**y@g**m	1
Wolf Vollprecht	w**t@g**m	1
asmith26	a****6	1
martinRenou	m**u@g**m	1
mpu-creare	m****e	1
stonebig	s**4@g**m	1
and 15 more...

Committer Domains (Top 20 + Academic)

gitter.im: 1 gmx.de: 1 nelen-schuurmans.nl: 1 kitware.com: 1 sardus.it: 1 damcb.com: 1 surfsara.nl: 1

Issues and Pull Requests

Last synced: 7 months ago

All Time

Total issues: 68
Total pull requests: 46
Average time to close issues: 8 months
Average time to close pull requests: 3 months
Total issue authors: 61
Total pull request authors: 24
Average comments per issue: 3.07
Average comments per pull request: 2.98
Merged pull requests: 21
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 2
Pull requests: 2
Average time to close issues: N/A
Average time to close pull requests: N/A
Issue authors: 1
Pull request authors: 2
Average comments per issue: 0.5
Average comments per pull request: 1.5
Merged pull requests: 0
Bot issues: 0
Bot pull requests: 0

View more stats

Top Authors

Issue Authors

notEvil (3)
juanbolso (2)
patquem (2)
GenevieveBuckley (2)
Carifio24 (2)
MarcSkovMadsen (2)
Hackathorn (1)
matemato (1)
ShuvamGupta (1)
nathalie29856 (1)
rickvanhoof (1)
spigelli (1)
alvaro-luque (1)
MattiasOlla (1)
Thomzoy (1)

Pull Request Authors

maartenbreddels (17)
GenevieveBuckley (4)
jtpio (2)
zed (2)
jeammimi (2)
flokli (2)
rinftech-github (2)
rafique (1)
iisakkirotko (1)
TimoFriedri (1)
tmcaloone (1)
rpanai (1)
mgeier (1)
scottdraves (1)
0xflotus (1)

Top Labels

Issue Labels

Funded (1) enhancement (1)

Pull Request Labels

Packages

Total packages: 1
Total downloads: unknown

Total dependent packages: 4
Total dependent repositories: 77
Total versions: 16

conda-forge.org: ipyvolume

Homepage: https://github.com/widgetti/ipyvolume
License: MIT
Latest release: 0.5.2
published over 6 years ago

Versions: 16
Dependent Packages: 4
Dependent Repositories: 77

Rankings

Dependent repos count: 4.0%

Stargazers count: 9.2%

Average: 9.3%

Forks count: 11.6%

Dependent packages count: 12.5%

Last synced: 6 months ago

Dependencies

.github/workflows/build.yml actions

actions/checkout v2 composite
actions/download-artifact v2 composite
actions/setup-node v1 composite
actions/setup-python v2 composite
actions/upload-artifact v2 composite
ifaxity/wait-on-action v1 composite
mamba-org/provision-with-micromamba main composite

.github/workflows/release.yml actions

actions/checkout v2 composite
actions/setup-node v1 composite
actions/setup-python v2 composite

binder/environment.yml conda

nodejs

js/package-lock.json npm

1253 dependencies

js/package.json npm

@jupyterlab/builder ^3.0.0 development
@types/chai ^4.1.4 development
@types/d3 ^5.7.2 development
@types/expect.js ^0.3.29 development
@types/mocha ^2.2.48 development
@types/node ^12.0.2 development
@types/requirejs ^2.1.31 development
@types/three ^0.93.4 development
bqplot ^0.5.0 development
chai ^4.1.2 development
eslint ^5.13.0 development
eslint-config-standard ^12.0.0 development
eslint-plugin-import ^2.16.0 development
eslint-plugin-node ^8.0.1 development
eslint-plugin-promise ^4.0.1 development
eslint-plugin-standard ^4.0.0 development
json-loader ^0.5.4 development
jupyter-threejs ^2.3.0 development
karma ^4.0.0 development
karma-chai ^0.1.0 development
karma-chrome-launcher ^2.0.0 development
karma-mocha ^1.3.0 development
karma-mocha-reporter ^2.2.5 development
karma-sinon ^1.0.5 development
karma-sourcemap-loader ^0.3.7 development
karma-webpack ^3.0.5 development
mocha ^3.5.3 development
npm-run-all ^4.1.3 development
raw-loader ~3.0.0 development
sinon ^2.4.1 development
sinon-chai ^2.11.0 development
source-map-loader ^0.2.4 development
typescript ^3.5.2 development
url-loader ^0.5.7 development
webpack ^4.29.1 development
webpack-cli ^3.2.3 development
@jupyter-widgets/base ^1 || ^2.0.2 || ^3 || ^4 || ^5 || ^6
@jupyter-widgets/controls ^1 || ^2
css-loader ^0.28.4
d3 ^5.7.0
gl-matrix ^2.0.0
is-typedarray ~1.0.0
jquery ^3.1.1
jslink ^1.1.3
lodash ^4.17.15
mustache ^2.3.1
ndarray ~1.0.18
ndarray-pack ^1.2.1
screenfull ^3.3.1
style-loader ^0.18.2
three ^0.97.0
three-text2d ~0.4.1
tslint ^5.20.0
underscore ^1.8.3
webrtc-adapter ^4.2.2

jslab/package.json npm

json-loader ^0.5.4 development
raw-loader ^0.5.1 development
url-loader ^0.5.7 development
webpack ^1.12.14 development
@jupyter-widgets/jupyterlab-manager ^0.28.0
ipyvolume ~0.4.0

ui-tests/package.json npm

@jupyterlab/galata 3.0.11-2
klaw-sync ^6.0.0
rimraf ^3.0.2

ui-tests/yarn.lock npm

607 dependencies

pyproject.toml pypi

requirements_rtd.txt pypi

Pillow *
bokeh *
corner *
docutils ==0.17.1
emcee *
ipython_genutils *
ipyvolume ==0.6.0a10
ipywebrtc *
ipywidgets >=7.4.0
jupyter_sphinx ==0.1.4
matplotlib ==3.1.1
nbclient fix_update_widget_buffers
nbconvert fix_closing_script_early
nbsphinx fix_closing_script_early
recommonmark *
requests *
scipy *
sphinx_gallery *
traitlets *
traittypes *
vaex-core *
vaex-hdf5 *
vaex-ml *
vaex-viz *

setup.py pypi

Pillow *
bqplot *
ipyvue >=1.7.0
ipyvuetify *
ipywebrtc *
ipywidgets >=7.0.0
matplotlib *
numpy *
pythreejs >=2.4.0
requests *
traitlets *
traittypes *

ipyvolume

Science Score: 10.0%

Keywords

Keywords from Contributors

Repository

Basic Info

Statistics

Topics

Metadata Files

README.md

ipyvolume

Documentation

Screencast demos

Animation

Volume rendering

Glyphs (quiver plots)

Installation

Using pip

Conda/Anaconda

Pre-notebook 5.3

Pip as user: (but really, do not do this)

Developer installation

for jupyterlab (>=3.0), symlink share/jupyter/labextensions/bqplot-image-gl

Developer workflow

Jupyter notebook (classical)

Owner

GitHub Events

Total

Last Year

Committers

All Time

Past Year

Top Committers

Committer Domains (Top 20 + Academic)

Issues and Pull Requests

All Time

Past Year

Top Authors

Issue Authors

Pull Request Authors

Top Labels

Issue Labels

Pull Request Labels

Packages

conda-forge.org: ipyvolume

Rankings

Dependencies