annotationhub
Client for the Bioconductor AnnotationHub web resource
Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic links in README
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✓Committers with academic emails
1 of 26 committers (3.8%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (0.7%) to scientific vocabulary
Keywords
core-package
u24ca289073
Keywords from Contributors
bioconductor-package
genomics
gene
bioconductor
transcriptomics
bioinformatics
mass-spectrometry
proteomics
core-services
microbiome
Last synced: 6 months ago
·
JSON representation
Repository
Client for the Bioconductor AnnotationHub web resource
Basic Info
- Host: GitHub
- Owner: Bioconductor
- Language: R
- Default Branch: devel
- Homepage: https://bioconductor.org/packages/AnnotationHub
- Size: 1.38 MB
Statistics
- Stars: 19
- Watchers: 9
- Forks: 16
- Open Issues: 5
- Releases: 0
Topics
core-package
u24ca289073
Created over 8 years ago
· Last pushed 7 months ago
Metadata Files
Changelog
Owner
- Name: Bioconductor
- Login: Bioconductor
- Kind: organization
- Website: https://bioconductor.org
- Repositories: 156
- Profile: https://github.com/Bioconductor
Software for the analysis and comprehension of high-throughput genomic data
GitHub Events
Total
- Issues event: 4
- Watch event: 3
- Delete event: 1
- Issue comment event: 13
- Push event: 16
- Pull request review comment event: 2
- Pull request review event: 5
- Pull request event: 8
- Fork event: 2
- Create event: 5
Last Year
- Issues event: 4
- Watch event: 3
- Delete event: 1
- Issue comment event: 13
- Push event: 16
- Pull request review comment event: 2
- Pull request review event: 5
- Pull request event: 8
- Fork event: 2
- Create event: 5
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Marc Carlson | m****n@f****g | 230 |
| lshep | l****d@r****g | 121 |
| Martin Morgan | m****n@f****g | 84 |
| Valerie Obenchain | v****a@f****g | 55 |
| Sonali Arora | s****a@f****g | 55 |
| Dan Tenenbaum | d****a@f****g | 48 |
| lshep | s****l@g****m | 25 |
| Nitesh Turaga | n****a@g****m | 14 |
| Jim Java | j****a@r****g | 13 |
| Martin Morgan | m****n@r****g | 12 |
| Herve Pages | h****s@f****g | 9 |
| Lori Shepherd | L****d@R****g | 9 |
| LiNk-NY | m****z@r****g | 8 |
| Hervé Pagès | h****b@g****m | 7 |
| J Wokaty | j****y@s****u | 4 |
| Charlotte Soneson | c****n@g****m | 4 |
| vobencha | v****n@r****g | 3 |
| Kayla-Morrell | k****l@r****g | 3 |
| Nathaniel Hayden | n****n@f****g | 2 |
| Hervé Pagès | h****s@f****g | 2 |
| vobencha | v****a@g****m | 2 |
| J Wokaty | j****y | 2 |
| LiNk-NY | m****9@g****m | 1 |
| Michael Steinbaugh | m****e@s****m | 1 |
| Mike Love | m****e | 1 |
| mikelove | m****e@g****m | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 47
- Total pull requests: 15
- Average time to close issues: 27 days
- Average time to close pull requests: 16 days
- Total issue authors: 40
- Total pull request authors: 7
- Average comments per issue: 5.0
- Average comments per pull request: 2.93
- Merged pull requests: 11
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 2
- Pull requests: 3
- Average time to close issues: 2 days
- Average time to close pull requests: about 2 months
- Issue authors: 2
- Pull request authors: 2
- Average comments per issue: 1.5
- Average comments per pull request: 0.33
- Merged pull requests: 2
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- HenrikBengtsson (3)
- mtmorgan (2)
- mjsteinbaugh (2)
- hpages (2)
- vjcitn (2)
- kokitsuyuzaki (2)
- jmacdon (1)
- gxt13111560461 (1)
- lshep (1)
- Ci-TJ (1)
- Fred-White94 (1)
- reliscu (1)
- MattBrauer (1)
- martin-g (1)
- sk-sahu (1)
Pull Request Authors
- LiNk-NY (6)
- votti (2)
- mikelove (2)
- csoneson (2)
- FelixErnst (2)
- lshep (1)
- mjsteinbaugh (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
DESCRIPTION
cran
- BiocFileCache >= 1.5.1 depends
- BiocGenerics >= 0.15.10 depends
- AnnotationHubData * enhances
- AnnotationDbi >= 1.31.19 imports
- BiocManager * imports
- BiocVersion * imports
- RSQLite * imports
- S4Vectors * imports
- curl * imports
- dplyr * imports
- grDevices * imports
- httr * imports
- interactiveDisplayBase * imports
- methods * imports
- rappdirs * imports
- utils * imports
- yaml * imports
- AnnotationForge * suggests
- BiocStyle * suggests
- Biostrings * suggests
- ExperimentHub * suggests
- GenomeInfoDb * suggests
- GenomicFeatures * suggests
- GenomicRanges * suggests
- HubPub * suggests
- IRanges * suggests
- MSnbase * suggests
- RUnit * suggests
- Rsamtools * suggests
- SummarizedExperiment * suggests
- VariantAnnotation * suggests
- gdsfmt * suggests
- knitr * suggests
- mzR * suggests
- rBiopaxParser * suggests
- rmarkdown * suggests
- rtracklayer * suggests