envi - v0.1.19

• Fixed bug in calculation of False Discovery Rate in internal pval_correct() function
• Fixed test for plot_perturb() function that was presenting a warning by specifying cref0
• Argument plot_cols correctly renamed cols in div_plot() and seq_plot() functions
• Fixed 'Moved Permanently' content by replacing the old URL with the new URL

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Published by idblr over 2 years ago

envi - v0.1.17

• Migrated R-spatial dependencies
• Replaced raster, rgeos, and sp packages in Imports with terra and sf because of imminent package retirements
• Removed maptools from Suggests (replaced with new internal function as.im.SpatRaster())
• Thank you, Roger Bivand, for the notice. Relates to ndi Issue #3
• Note: raster is a dependency of RStoolbox (at present) which is used in the vignette
• Updated test, examples, vignette, and documentation throughout
• Added GitHub R-CMD-check
• Updated citation style for CITATION file
• Fixed broken link in CITATION

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Published by idblr over 3 years ago

envi - v0.1.15

• Updated package URL and BugReports to renamed GitHub account "lance-waller-lab" (previously "Waller-SUSAN")
• Replaced methods::is() with inherits() and methods is no longer Imports
• Added maptools and RStoolbox to Suggests (used in the package vignette)
• Added CITATION file
• Fixed typos in documentation throughout
• Added future::plan(future::multisession) in tests to remove the files in temp directory
• Added links to sparr package in 'package.R'

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Published by idblr almost 4 years ago

envi - v0.1.13

• In the div_plot() and seq_plot() internal functions, replaced if (class(input) == "im") with if (methods::is(input, "im"))
• Added methods package to Imports
• Re-added utils package to Suggests because "zzz.R" calls the packageDescription() function
• Moved spatstat.random package from Imports to Suggests because the rpoispp() function is only used for tests
• Fixed bug in perlrren() function that will now keep the predicted values even if NA
• Fixed bug in plot_perturb() function that will now project rasters using method = "bilinear" for continuous values
• Streamlined "test-perlrren.R" by removing duplicate tests for "incorrectly specified n_sim"
• Fixed bug in "test-plot_cv.R" by resetting the graphics within an error check to clear a warning between tests

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Published by idblr about 4 years ago

envi - v0.1.11

• Updated dependencies spatstat.core and spatstat.linnet packages based on feedback from the Spatstat Team (Adrian Baddeley and Ege Rubak). All random generators in spatstat.core were moved to a new package spatstat.random
  • spatstat.geom, spatstat.core, spatstat.linnet, and spatstat (>=2.0-0) are no longer Depends.
  • spatstat.geom and spatstat.random are now Imports
  • spatstat.data is now Suggests.
  • See the GitHub merge pull request.
• maptools is no longer Imports
• Fixed annotation typos in the perlrren(), pval_correct(), lrren() functions
• Fixed bug in plot_cv() function that will specify the size of the confidence interval in the subtitle based on the chosen alpha level

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Published by idblr over 4 years ago

envi - Adding Zenodo DOI

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Published by idblr almost 5 years ago

envi - CRAN v0.1.10

• Addressed ERROR on R-devel CRAN environments by setting parallelly.makeNodePSOCK.setup_strategy = sequential for all CRAN tests as suggested by the maintainer for the future and parallelly packages who is actively working on a solution https://github.com/HenrikBengtsson/parallelly/issues/65

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Published by idblr almost 5 years ago

envi - CRAN v0.1.9

• Removed LazyData: true from 'DESCRIPTION' file because the package has no data accessed via a data() command and has no data/ directory (in response to CRAN NOTE: 'LazyData' is specified without a 'data' directory)
  • Following advice from future package maintainer, now spatial_power() and jitter_power() functions reset future strategy when exiting
  • Addressed ERROR in MacOS environments on rhub by setting the parallelly.makeNodePSOCK.setup_strategy = sequential for MacOS environments running tcltk until parallelly (>=1.26.1-9002) is on CRAN. This workaround was suggested by the parallelly maintainer https://github.com/HenrikBengtsson/parallelly/issues/62#issuecomment-880665390

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Published by idblr almost 5 years ago

envi -

• Updated spatstat package to new subsetted packages based on feedback from the Spatstat Team (Adrian Baddeley and Ege Rubak). Now spatstat.geom, spatstat.core, spatstat.linnet, and spatstat (>= 2.0-0) are in Depends
• Replaced parallel and doParallel packages in Imports with doFuture, doRNG, and future packages to allow for parallel processing in lrren() and perlrren() functions to work across all CRAN environments
• Removed utils package from Imports because the progress bar in lrren() and perlrren() functions is now produced with a helper function in utils.R that imports the iterators package
• Set default for n_core argument in lrren() and perlrren() to be n_core = 2 to match documentation
• Fixed bug in pval_correct() when p_correct = "FDR" that will return the minimum p-value instead of NULL if no p-value is less than the p-critical value
• Updated cref0 and cref1 arguments in plot_predict() and plot_perturb() functions for PROJ6. Now calls sp::CRS() function within the raster::projectRaster() function and reformats the default argument values
• Updated testthat checks for parallelization in lrren() and perlrren() functions and testthat checks for PROJ6 updates in plot_predict() and plot_perturb() functions

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Published by idblr about 5 years ago

envi -

Updated 'spatstat' package to new subsetted packages based on feedback from the Spatstat Team (Adrian Baddeley and Ege Rubak). 'spatstat.geom' and spatstat.core' packages replace 'spatstat' package in Imports

Added p_correct argument to lrren() and perlrren() which calls a new, internal function pval_correct() that calculates three types of corrections for multiple testing (FDR, Sidak, Bonferroni)

Removed a cv output for pval surface in lrren() that is not used in plot_cv()

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Published by idblr over 5 years ago

envi -

• Fixed testthat preparation for plotcv(), plotobs(), and plot_predict() to remove "Warning message: In graphics::par(op): calling par(new=TRUE) with no plot"
• Removed parallel tests in testthat for lrren() and perlrren() as there is a known error with makePSOCKcluster() in R version > 4.0.0 (created error only in r-patched-solaris-x86 and r-release-macos-x86_64).
• Updated URLs in envi-package.Rd
• Updated year in DESCRIPTION

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Published by idblr over 5 years ago

envi -

- R
Published by idblr over 5 years ago