Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
  • codemeta.json file
  • .zenodo.json file
  • DOI references
    Found 4 DOI reference(s) in README
  • Academic publication links
  • Committers with academic emails
    1 of 6 committers (16.7%) from academic institutions
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (7.7%) to scientific vocabulary

Keywords

bioinformatics r single-cell

Keywords from Contributors

bioconductor-package gene grna-sequence genomics transcriptomics ontology immune-repertoire sequencing proteomics
Last synced: 6 months ago · JSON representation

Repository

CiteFuse:

Basic Info
Statistics
  • Stars: 28
  • Watchers: 10
  • Forks: 5
  • Open Issues: 3
  • Releases: 0
Topics
bioinformatics r single-cell
Created about 6 years ago · Last pushed about 3 years ago
Metadata Files
Readme

README.md

CiteFuse

CiteFuse is a streamlined package consisting of a suite of tools for pre-processing, modality integration, clustering, differential RNA and ADT expression analysis, ADT evaluation, ligand-receptor interaction analysis, and interactive web-based visualization of CITE-seq data

Installation

Install CiteFuse via Bioconductor

r library(BiocManager) BiocManager::install("CiteFuse")

Install github version CiteFuse

r BiocManager::install("SydneyBioX/CiteFuse")

Vignette

You can find the vignette at our website: https://sydneybiox.github.io/CiteFuse/articles/CiteFuse.html.

CiteFuse overview

Citation

Hani Jieun Kim, Yingxin Lin, Thomas A Geddes, Jean Yee Hwa Yang, Pengyi Yang, CiteFuse enables multi-modal analysis of CITE-seq data, _Bioinformatics_, Volume 36, Issue 14, 15 July 2020, Pages 4137–4143, [https://doi.org/10.1093/bioinformatics/btaa282](https://doi.org/10.1093/bioinformatics/btaa282)

Owner

  • Name: Sydney Precision Data Science Centre
  • Login: SydneyBioX
  • Kind: organization
  • Location: Sydney, Australia

SPDSC alliance brings together multiple research groups and junior and senior researchers with shared interests in bioinformatics and computational sciences.

GitHub Events

Total
  • Issues event: 1
  • Watch event: 3
  • Issue comment event: 1
Last Year
  • Issues event: 1
  • Watch event: 3
  • Issue comment event: 1

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 73
  • Total Committers: 6
  • Avg Commits per committer: 12.167
  • Development Distribution Score (DDS): 0.301
Past Year
  • Commits: 8
  • Committers: 3
  • Avg Commits per committer: 2.667
  • Development Distribution Score (DDS): 0.5
Top Committers
Name Email Commits
yingxinlin y****y@g****m 51
Nitesh Turaga n****a@g****m 10
Yingxin Lin 3****n 4
Hani Jieun Kim h****7@g****m 3
Nick n****r@g****m 3
J Wokaty j****y@s****u 2
Committer Domains (Top 20 + Academic)