Data

Tools

Indexes

Applications

Experiments

Open Source Science

trna

:package: tRNA: Analyzing tRNA sequences and structures

https://github.com/felixernst/trna

Science Score: 49.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 5 committers (20.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (10.7%) to scientific vocabulary

Keywords

bioconductor r sequences structures trna

Keywords from Contributors

bioconductor-package gene transcriptomics immune-repertoire genomics ontology proteomics clusters core-package cell-free-dna
Last synced: 6 months ago · JSON representation

Repository

:package: tRNA: Analyzing tRNA sequences and structures

Basic Info
Statistics
  • Stars: 1
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Topics
bioconductor r sequences structures trna
Created over 7 years ago · Last pushed almost 2 years ago
Metadata Files
Readme Changelog License

README.md

tRNA

R-CMD-check BioC Build codecov BioC Years <!-- badges: end -->

The tRNA package allows feature information of tRNAs to be accessed and list of tRNA to be subset based on these features. The main purpose is to unify overlapping functions from the tRNAscanImport and tRNAdbImport packages.

The functionality is currently under development and may change. The package expects a GRanges object with certain columns as input. The following columns are a requirement: tRNA_length, tRNA_type, tRNA_anticodon, tRNA_seq, tRNA_str, tRNA_CCA.end. Outputs of tRNAscanImport and tRNAdbImport meet these requirements.

Installation

The current version of the tRNA package is available from Bioconductor.

```{r} BiocManager::install("tRNA")

Load and attach thepackage

library("tRNA") ```

Functions

Have a look at the vignette for an overview of the functionality. Additional functions are planned to be added in the future.

Owner

  • Name: Felix Ernst
  • Login: FelixErnst
  • Kind: user

GitHub Events

Total
Last Year

Committers

Last synced: 7 months ago

All Time
  • Total Commits: 89
  • Total Committers: 5
  • Avg Commits per committer: 17.8
  • Development Distribution Score (DDS): 0.258
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Felix Ernst f****t@u****e 66
Nitesh Turaga n****a@g****m 14
J Wokaty j****y@s****u 6
vobencha v****a@g****m 2
Hervé Pagès h****b@g****m 1
Committer Domains (Top 20 + Academic)
sph.cuny.edu: 1 ulb.ac.be: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 0
  • Total pull requests: 2
  • Average time to close issues: N/A
  • Average time to close pull requests: 3 minutes
  • Total issue authors: 0
  • Total pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
  • FelixErnst (2)
Top Labels
Issue Labels
Pull Request Labels