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enrichmentbrowser

Seamless navigation through combined results of set-based and network-based enrichment analysis

https://github.com/lgeistlinger/enrichmentbrowser

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 14 committers (7.1%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (1.6%) to scientific vocabulary

Keywords from Contributors

bioconductor-package gene genomics transcriptomics u24ca289073 core-package proteomics proteomics-data feature-detection peak-detection
Last synced: 10 months ago · JSON representation

Repository

Seamless navigation through combined results of set-based and network-based enrichment analysis

Basic Info
  • Host: GitHub
  • Owner: lgeistlinger
  • Language: R
  • Default Branch: devel
  • Size: 6.79 MB
Statistics
  • Stars: 21
  • Watchers: 3
  • Forks: 12
  • Open Issues: 11
  • Releases: 0
Created almost 9 years ago · Last pushed 11 months ago
Metadata Files
Readme Changelog

README.md

EnrichmentBrowser

Seamless navigation through combined results of set-based and network-based enrichment analysis

The package is available from Bioconductor.

Owner

  • Login: lgeistlinger
  • Kind: user
  • Location: Boston, MA
  • Company: Harvard Medical School

GitHub Events

Total
  • Issues event: 2
  • Watch event: 1
  • Issue comment event: 1
  • Push event: 4
  • Pull request event: 2
  • Fork event: 2
  • Create event: 1
Last Year
  • Issues event: 2
  • Watch event: 1
  • Issue comment event: 1
  • Push event: 4
  • Pull request event: 2
  • Fork event: 2
  • Create event: 1

Committers

Last synced: about 1 year ago

All Time
  • Total Commits: 261
  • Total Committers: 14
  • Avg Commits per committer: 18.643
  • Development Distribution Score (DDS): 0.521
Past Year
  • Commits: 2
  • Committers: 1
  • Avg Commits per committer: 2.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
lgeistlinger l****r@b****e 125
Ludwig Geistlinger L****r@b****e 46
lgeistlinger l****r@g****m 22
Rohit Satyam r****2@g****m 17
Nitesh Turaga n****a@g****m 14
Dan Tenenbaum d****a@f****g 11
J Wokaty j****y@s****u 10
Mirko Signorelli 2****o 4
Herve Pages h****s@f****g 4
vobencha v****a@g****m 2
Hervé Pagès h****s@f****g 2
vobencha v****n@r****g 2
Kayla-Morrell k****l@r****g 1
Marc Carlson m****n@f****g 1
Committer Domains (Top 20 + Academic)
fhcrc.org: 3 roswellpark.org: 2 bio.ifi.lmu.de: 2 fredhutch.org: 1 sph.cuny.edu: 1

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 48
  • Total pull requests: 6
  • Average time to close issues: 23 days
  • Average time to close pull requests: about 2 months
  • Total issue authors: 27
  • Total pull request authors: 4
  • Average comments per issue: 3.08
  • Average comments per pull request: 3.17
  • Merged pull requests: 3
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 2
  • Average time to close issues: 19 days
  • Average time to close pull requests: 2 days
  • Issue authors: 1
  • Pull request authors: 1
  • Average comments per issue: 1.0
  • Average comments per pull request: 0.0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • lgeistlinger (8)
  • Ju-Rien (5)
  • GabrielHoffman (5)
  • olkap (4)
  • grabearummc (3)
  • jdrnevich (2)
  • tim-meese (1)
  • cpuritz (1)
  • mctseng2 (1)
  • ZHIDIHUAYUAN (1)
  • fcamus (1)
  • jorainer (1)
  • haghshenas (1)
  • tobbyxy (1)
  • Shi-YuZhang (1)
Pull Request Authors
  • mirkosignorelli (2)
  • bd4everyone (2)
  • Rohit-Satyam (1)
  • vdsukhov (1)
Top Labels
Issue Labels
enhancement (17) bug (10) question (9) wontfix (1)
Pull Request Labels

Dependencies

DESCRIPTION cran
  • SummarizedExperiment * depends
  • graph * depends
  • AnnotationDbi * imports
  • BiocFileCache * imports
  • BiocManager * imports
  • GO.db * imports
  • GSEABase * imports
  • KEGGREST * imports
  • KEGGgraph * imports
  • Rgraphviz * imports
  • S4Vectors * imports
  • SPIA * imports
  • edgeR * imports
  • graphite * imports
  • hwriter * imports
  • limma * imports
  • methods * imports
  • pathview * imports
  • safe * imports
  • ALL * suggests
  • BiocStyle * suggests
  • ComplexHeatmap * suggests
  • DESeq2 * suggests
  • ReportingTools * suggests
  • airway * suggests
  • biocGraph * suggests
  • geneplotter * suggests
  • hgu95av2.db * suggests
  • knitr * suggests
  • msigdbr * suggests
  • rmarkdown * suggests