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Open Source Science

autonomics

https://github.com/bhagwataditya/autonomics

Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic links in README
  • ✓
    Committers with academic emails
    5 of 9 committers (55.6%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Unable to calculate vocabulary similarity

Keywords from Contributors

bioconductor-package gene genomics sequencing transcriptomics ontology clusters grna-sequence immune-repertoire proteomics
Last synced: 11 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: bhagwataditya
  • Language: R
  • Default Branch: devel
  • Size: 12 MB
Statistics
  • Stars: 1
  • Watchers: 3
  • Forks: 0
  • Open Issues: 2
  • Releases: 0
Created almost 6 years ago · Last pushed over 1 year ago
Metadata Files
Readme Changelog

Owner

  • Name: Aditya
  • Login: bhagwataditya
  • Kind: user

GitHub Events

Total
  • Public event: 1
  • Push event: 5
  • Create event: 1
Last Year
  • Public event: 1
  • Push event: 5
  • Create event: 1

Committers

Last synced: almost 3 years ago

All Time
  • Total Commits: 385
  • Total Committers: 9
  • Avg Commits per committer: 42.778
  • Development Distribution Score (DDS): 0.26
Past Year
  • Commits: 5
  • Committers: 2
  • Avg Commits per committer: 2.5
  • Development Distribution Score (DDS): 0.4
Top Committers
Name Email Commits
Aditya a****t@m****e 285
Aditya Bhagwat b****a@g****m 34
Johannes Graumann j****n@m****e 28
Aditya Bhagwat B****a@i****m 22
Nitesh Turaga n****a@g****m 6
Aditya Bhagwat a****t@u****e 5
J Wokaty j****y@s****u 2
r-cheologist r****t 2
Johannes Graumann j****0@q****u 1
Committer Domains (Top 20 + Academic)
mpi-bn.mpg.de: 2 qatar-med.cornell.edu: 1 sph.cuny.edu: 1 uni-marburg.de: 1 indivumed.com: 1

Issues and Pull Requests

Last synced: over 1 year ago

All Time
  • Total issues: 4
  • Total pull requests: 0
  • Average time to close issues: 4 months
  • Average time to close pull requests: N/A
  • Total issue authors: 3
  • Total pull request authors: 0
  • Average comments per issue: 4.25
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • HenrikBengtsson (2)
  • KeyTals (1)
  • dvito-mestag (1)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels

Dependencies

DESCRIPTION cran
  • R >= 4.0 depends
  • BiocFileCache * imports
  • BiocGenerics * imports
  • MultiAssayExperiment * imports
  • R.utils * imports
  • RColorBrewer * imports
  • S4Vectors * imports
  • SummarizedExperiment * imports
  • abind * imports
  • bit64 * imports
  • cluster * imports
  • codingMatrices * imports
  • colorspace * imports
  • data.table * imports
  • dplyr * imports
  • edgeR * imports
  • ggforce * imports
  • ggplot2 * imports
  • ggrepel * imports
  • grDevices * imports
  • graphics * imports
  • grid * imports
  • gridExtra * imports
  • limma * imports
  • magrittr * imports
  • matrixStats * imports
  • methods * imports
  • parallel * imports
  • readxl * imports
  • rlang * imports
  • scales * imports
  • stats * imports
  • stringi * imports
  • tidyr * imports
  • tidyselect * imports
  • tools * imports
  • utils * imports
  • vsn * imports
  • AnnotationDbi * suggests
  • AnnotationHub * suggests
  • Biobase * suggests
  • BiocManager * suggests
  • BiocStyle * suggests
  • Biostrings * suggests
  • DBI * suggests
  • GEOquery * suggests
  • GenomicDataCommons * suggests
  • GenomicRanges * suggests
  • ICSNP * suggests
  • MASS * suggests
  • OlinkAnalyze * suggests
  • RCurl * suggests
  • RSQLite * suggests
  • Rsubread * suggests
  • UniProt.ws * suggests
  • XML * suggests
  • affy * suggests
  • apcluster * suggests
  • diagram * suggests
  • e1071 * suggests
  • ensembldb * suggests
  • hgu95av2.db * suggests
  • jsonlite * suggests
  • knitr * suggests
  • lme4 * suggests
  • lmerTest * suggests
  • mixOmics * suggests
  • mpm * suggests
  • nlme * suggests
  • org.Hs.eg.db * suggests
  • org.Mm.eg.db * suggests
  • patchwork * suggests
  • pcaMethods * suggests
  • pheatmap * suggests
  • progeny * suggests
  • propagate * suggests
  • readODS * suggests
  • remotes * suggests
  • rmarkdown * suggests
  • ropls * suggests
  • rtracklayer * suggests
  • statmod * suggests
  • survival * suggests
  • survminer * suggests
  • testthat * suggests
  • writexl * suggests