cytoflow - Release 1.2.3 "mApple"

This release fixes a bug that kept Cytoflow from running on recent Mac OS versions. No other changes. Windows binaries still say "version 1.2.2".

- Python
Published by github-actions[bot] 7 months ago

cytoflow - Release 1.2.2

- Python
Published by github-actions[bot] 10 months ago

cytoflow - Release 1.2.1

- Python
Published by github-actions[bot] about 1 year ago

cytoflow - Release 1.2 "mCherry"

Release 1.2 "mCherry"

• Huge improvements to documentation. Head over to https://cytoflow.readthedocs.io for tutorials, HOWTOs, explainers, and reference documentation.
• Implemented an "experiment browser" to help keep track of channels, conditions, and statistics in the GUI.
• Add an FCS export "view". Save calibrated or compensated data back to FCS files for analysis with other tools.
• Better support for high-DPI displays.
• Major GUI code restructure to separate the model from the view and controller. As a result, cytoflow only creates one icon on the Mac taskbar now!
• Fix a number of bugs, including one high-profile bug where the GUI would crash on saving.
• Update dependencies to current versions.

- Python
Published by github-actions[bot] about 4 years ago

cytoflow - Release 1.1.1 "KillerRed"

Emergency release! Fixes a condition where saving a workflow would crash the GUI. The underlying cytoflow library is unchanged.

- Python
Published by github-actions[bot] almost 5 years ago

cytoflow - Release 1.1 "tdTomato"

Maintenance release.

• Update dependencies to current versions.
• Move CI infrastructure to GitHub Actions.
• Significant re-work of the GUI unit tests

- Python
Published by github-actions[bot] almost 5 years ago

cytoflow - 1.0

Cytoflow's 1.0 release! This marks the state at which Cytoflow is, for all intents and purposes, "feature-complete." Major additions in this release include:

• Update all dependent libraries to their latest versions. Notably, this updates matplotlib to 3.0.2 and PyQt to 5.9.2.
• Overhauled the experimental setup dialog, including the ability to import CSV files with filenames and experimental conditions.
• Packaging differences make program startup much, much faster. Also, a proper Windows installer!

- Python
Published by bpteague about 7 years ago

cytoflow - 0.9.3

Cytoflow release

- Python
Published by bpteague almost 8 years ago

cytoflow - 0.9.2

Cytoflow release

- Python
Published by bpteague almost 8 years ago

cytoflow - 0.9.1

Cytoflow release

- Python
Published by bpteague almost 8 years ago

cytoflow - 0.8.0

Cytoflow release

- Python
Published by bpteague about 8 years ago

cytoflow - 0.5.2

Fix MANIFEST.in to include logicle.h

- Python
Published by bpteague almost 9 years ago

cytoflow - 0.5.0 "GFP"

• Significant re-work of summary statistics generation and plotting
• Tighten down TASBE calibrated cytometry
• MANY many bug fixes, both in modules and GUI

- Python
Published by bpteague almost 9 years ago

cytoflow - 0.4.1

New in this release: - A GUI for the calibrated cytometry tools! - Bleedthrough compensation (both linear and piecewise-linear) - Bead calibration - Autofluorescence correction - Color mapping - Keep the same scales on plots in the same x, y facets - Significant under-the-hood re-wiring - Other bug-fixes

- Python
Published by bpteague over 9 years ago

cytoflow - 0.3.2 - "mVenus"

• Fix some Logicle crashers
• Add error bars to barplot, stats views
• Use FastLogicle -- it's faster!

- Python
Published by bpteague over 9 years ago

cytoflow - v0.3.0 - "mKate"

A public beta! - The point-and-click GUI is not only functional but useful. Serious restructuring behind the scenes, including a multi-process model to keep the GUI responsive. - More operations (GMMs) and views (2D histogram, 1 and 2D KDEs, violin plots.) - Lots (lots) of packaging work. One-click bundles and distribution infrastructure.

- Python
Published by bpteague almost 10 years ago

cytoflow - v0.2.0 "FITC"

A developer's beta! - Add a public API to Experiment to add conditions and channels. - Add scaling options to views, data-driven modules - Add 1D and 2D gaussian mixture models - Clean up import mess - Linear bleedthrough module, quad gate

- Python
Published by bpteague almost 10 years ago

cytoflow - v0.1.11 "Bimane"

• Drops the isValid() methods from the operations and views, expecting estimate(), plot() and apply() to instead check (early!) if it's valid and throw an exception if not.
• Gave operations an optional defaultView() method, for interactive plots and the like: allows tighter coupling between an interactive plot and the module whose traits it's viewing or changing.
• Unit testing infrastructure. At the moment, mostly smoke tests, not actual functionality testing.
• More examples!
• TASBE workflow fixes. Now they (mostly) match the implementation at synbiotools.bbn.com.

- Python
Published by bpteague about 10 years ago

cytoflow - v0.1.8 "Alexa-594"

Better packaging, better documentation, better instructions. Now the EasyInstall script should work on Windows!

- Python
Published by bpteague over 10 years ago

cytoflow - v0.1.7 "4',6-diamidino-2-phenylindole"

This release is all about being explicit.

Explicitly add logicle.h to the source dist.

Move from FlowCytometryTools to fcsparser.

Make ReadTheDocs work again.

- Python
Published by bpteague over 10 years ago

cytoflow - v0.1.5 "DAPI"

TASBE Implementation; Logicle packaging figured out.

- Python
Published by bpteague over 10 years ago

cytoflow - v0.1.4 "AmCyan"

An alpha release with a mostly working GUI!

- Python
Published by bpteague over 10 years ago

cytoflow - v0.1.2 "Peridinin"

The first public release of CytoFlow.

- Python
Published by bpteague almost 11 years ago