seqlogo
This is the seqLogo development repository. seqLogo plots position weight matrix of a sequence motif as a sequence logo.
Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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✓Committers with academic emails
3 of 15 committers (20.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (9.0%) to scientific vocabulary
Keywords from Contributors
Repository
This is the seqLogo development repository. seqLogo plots position weight matrix of a sequence motif as a sequence logo.
Basic Info
- Host: GitHub
- Owner: ivanek
- Language: R
- Default Branch: devel
- Homepage: https://bioconductor.org/packages/seqLogo/
- Size: 2.41 MB
Statistics
- Stars: 4
- Watchers: 2
- Forks: 1
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
seqLogo - Plotting the position weight matrix of a DNA/RNA sequence motif as a sequence logo
Software status
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Authors
- Oliver Bembom
- Robert Ivanek
Overview
seqLogo takes the position weight matrix of a DNA sequence motif and plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).
Installation
Release version
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("seqLogo", version = "release")
Developmental version
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("seqLogo", version = "devel")
Github
if (!requireNamespace("remotes", quietly = TRUE))
install.packages("remotes")
remotes::install_github("ivanek/seqLogo")
Usage
For detailed instructions check the package vignette (release or developmental version). Or the GitHub.io page.
Citation
citation("seqLogo")
- Oliver Bembom and Robert Ivanek (2020). seqLogo: Sequence logos for DNA sequence alignments.
Owner
- Name: Robert Ivánek
- Login: ivanek
- Kind: user
- Location: Basel, Switzerland
- Company: University of Basel
- Website: https://biomedizin.unibas.ch/en/core-facilities/bioinformatics/
- Repositories: 2
- Profile: https://github.com/ivanek
GitHub Events
Total
- Watch event: 1
- Push event: 1
- Fork event: 1
Last Year
- Watch event: 1
- Push event: 1
- Fork event: 1
Committers
Last synced: almost 3 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Robert Ivánek | r****k@u****h | 39 |
| Dan Tenenbaum | d****a@f****g | 24 |
| Nitesh Turaga | n****a@g****m | 14 |
| Herve Pages | h****s@f****g | 12 |
| Patrick Aboyoun | u****n | 11 |
| vobencha | v****n@r****g | 2 |
| Hervé Pagès | h****s@f****g | 2 |
| Oliver Bembom | b****m@b****u | 2 |
| vobencha | v****a@g****m | 2 |
| J Wokaty | j****y | 2 |
| J Wokaty | j****y@s****u | 2 |
| Martin Morgan | M****n@R****g | 1 |
| Chao-Jen Wong | c****2@f****g | 1 |
| Nishant Gopalakrishnan | n****k@f****g | 1 |
| Martin Morgan | m****n@f****g | 1 |