Recent Releases of circtools
circtools - v2.0.3
We are proud to release a new maintenance version of circtools, 2.0.3:
What's Changed
- hot fix for nanopore module reference download from Genome Browser -> @tjakobi https://github.com/jakobilab/circtools/issues/56
- conservation output -> pdf by @wjmellon in https://github.com/jakobilab/circtools/pull/48
- failsafe for misconfigured runners by @wjmellon in https://github.com/jakobilab/circtools/pull/50
- remove ubuntu line + delete wget install by @wjmellon in https://github.com/jakobilab/circtools/pull/52
- delete unnecessary installs and check ensembl by @wjmellon in https://github.com/jakobilab/circtools/pull/53
Full Changelog: https://github.com/jakobilab/circtools/compare/v2.0.2...v2.0.3
- Python
Published by tjakobi 11 months ago
circtools - v2.0.2
We are proud to release a new maintenance version of circtools, 2.0.2:
What's Changed
- Conservation module with intronic circle check by @shubhada-kulkarni in https://github.com/jakobilab/circtools/pull/31
- Commented the local blast running part by @shubhada-kulkarni in https://github.com/jakobilab/circtools/pull/34
- OpenSSL Primex Fix by @wjmellon in https://github.com/jakobilab/circtools/pull/41
- Add circtools example data for CI by @wjmellon in https://github.com/jakobilab/circtools/pull/43
- Docker Setup Files by @wjmellon in https://github.com/jakobilab/circtools/pull/37
- Pip tests by @wjmellon in https://github.com/jakobilab/circtools/pull/46
- Docker Tests by @wjmellon in https://github.com/jakobilab/circtools/pull/47
Full Changelog: https://github.com/jakobilab/circtools/compare/v2.0.1...v2.0.2
- Python
Published by tjakobi 12 months ago
circtools - circtools 2.0 released
We are proud to release a new major version of circtools, 2.0 that include 4 new modules!
- conservation module: enables users to perform circRNA conservation analysis in five widely studied animal model species: mouse, human, rat, pig, and dog.
- padlock probe design: a specialized primer design tool tailored specifically for next-generation spatial transcriptomics technology.
- nanopore module: requires sequencing reads that have been produced using the protocol outlined in Rahimi et al. (2021) and enables full-length circRNA detection.
- metatool module: offers integration of circularRNA predictions from CIRIquant to boost recall rates for circRNA detection.
- Python
Published by tjakobi over 1 year ago
circtools - circtools 1.3.1 released
We are proud to release a new maintenance version of circtools, 1.3.1 as of today.
Fixes
- Fixed an issue with the R dependency installation script that used an outdated Microsoft CRAN mirror and thus would fail to install all packages (#2 )
- Python
Published by tjakobi almost 3 years ago