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emperor

Emperor a tool for the analysis and visualization of large microbial ecology datasets

https://github.com/biocore/emperor

Science Score: 33.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ✓
    Academic publication links
    Links to: ncbi.nlm.nih.gov
  • ✓
    Committers with academic emails
    3 of 17 committers (17.6%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (9.7%) to scientific vocabulary

Keywords

bioinformatics biplots emperor microbiome ordination python visualization

Keywords from Contributors

closember astronomy biom qiime
Last synced: 6 months ago · JSON representation

Repository

Emperor a tool for the analysis and visualization of large microbial ecology datasets

Basic Info
Statistics
  • Stars: 55
  • Watchers: 10
  • Forks: 47
  • Open Issues: 64
  • Releases: 26
Topics
bioinformatics biplots emperor microbiome ordination python visualization
Created about 13 years ago · Last pushed 8 months ago
Metadata Files
Readme Changelog Contributing License

README.md

Emperor

Join the chat at https://gitter.im/biocore/emperor Coverage Status

Emperor is a next-generation tool for the analysis and visualization of large microbial ecology datasets. Amongst its many features, Emperor provides a modern user interface that can be rapidly adjusted to your data analysis workflow.

To start using Emperor, please refer to the installation notes.

Before contributing code to Emperor, please familiarize yourself with the contributing guidelines.

Usage

You can start using Emperor through QIIME 2's interfaces (the command line or the graphical user interface), or alternatively using the Python interface (compatible with the Jupyter notebook, see this example). For more details, refer to our online documentation.

Publications

Owner

  • Name: biocore
  • Login: biocore
  • Kind: organization
  • Location: Cyberspace

Collaboratively developed bioinformatics software.

GitHub Events

Total
  • Watch event: 2
  • Issue comment event: 3
  • Push event: 1
  • Pull request review event: 1
  • Pull request event: 4
  • Fork event: 2
Last Year
  • Watch event: 2
  • Issue comment event: 3
  • Push event: 1
  • Pull request review event: 1
  • Pull request event: 4
  • Fork event: 2

Committers

Last synced: 9 months ago

All Time
  • Total Commits: 774
  • Total Committers: 17
  • Avg Commits per committer: 45.529
  • Development Distribution Score (DDS): 0.235
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Yoshiki Vázquez Baeza y****9@g****m 592
Antonio Gonzalez a****a@g****m 48
Jackson Chen t****n@g****m 34
Jamie Morton j****n@g****m 28
Jose Navas j****a@g****m 21
Meg Pirrung m****p@g****m 17
Greg Caporaso g****o@g****m 11
Santiago Torres t****s@g****m 4
Marcus Fedarko m****o@u****u 4
wdwvt1 w****1@g****m 3
Jai Ram Rideout j****t@g****m 3
Daniel McDonald m****t@c****u 3
teravest e****t@g****m 2
Adam Robbins-Pianka a****a@c****u 1
Hazel Dilmore 5****e 1
James Addison 5****n 1
The Gitter Badger b****r@g****m 1
Committer Domains (Top 20 + Academic)
colorado.edu: 2 gitter.im: 1 ucsd.edu: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 56
  • Total pull requests: 57
  • Average time to close issues: over 1 year
  • Average time to close pull requests: 6 months
  • Total issue authors: 20
  • Total pull request authors: 13
  • Average comments per issue: 1.61
  • Average comments per pull request: 3.56
  • Merged pull requests: 41
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 5
  • Average time to close issues: N/A
  • Average time to close pull requests: about 20 hours
  • Issue authors: 1
  • Pull request authors: 1
  • Average comments per issue: 1.0
  • Average comments per pull request: 1.2
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • fedarko (15)
  • ElDeveloper (11)
  • antgonza (7)
  • wasade (3)
  • FranckLejzerowicz (3)
  • ekunselman (2)
  • sjanssen2 (2)
  • MrX-NGS (1)
  • oseias-r-junior (1)
  • actapia (1)
  • wdwvt1 (1)
  • kliere (1)
  • tillea (1)
  • RNAer (1)
  • dhakim87 (1)
Pull Request Authors
  • ElDeveloper (35)
  • actapia (5)
  • fedarko (5)
  • thermokarst (2)
  • ahdilmore (2)
  • jayaddison (1)
  • ConstantinoSchillebeeckx (1)
  • mortonjt (1)
  • jerryatmda (1)
  • dhakim87 (1)
  • IRENEYXH (1)
  • wasade (1)
  • antgonza (1)
Top Labels
Issue Labels
bug (14) enhancement (13) GUI (7) export (4) high-priority (2) CLI (2) quick fix (2) packaging (1) animations (1) biplots (1) question (1) wontfix (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 243 last-month
  • Total docker downloads: 94,023
  • Total dependent packages: 0
  • Total dependent repositories: 8
  • Total versions: 34
  • Total maintainers: 1
pypi.org: emperor

Emperor

  • Versions: 34
  • Dependent Packages: 0
  • Dependent Repositories: 8
  • Downloads: 243 Last month
  • Docker Downloads: 94,023
Rankings
Docker downloads count: 1.1%
Dependent repos count: 5.2%
Forks count: 5.8%
Average: 7.9%
Stargazers count: 9.2%
Dependent packages count: 10.0%
Downloads: 16.3%
Maintainers (1)
qiime.help
Last synced: 6 months ago

Dependencies

.github/workflows/main.yml actions
  • AndreMiras/coveralls-python-action develop composite
  • actions/checkout v2 composite
  • actions/setup-node v1 composite
  • conda-incubator/setup-miniconda v2 composite
setup.py pypi