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mutalyzer

Tool suite for HGVS variant descriptions

https://github.com/mutalyzer/mutalyzer

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.2%) to scientific vocabulary

Keywords

bioinformatics convert description hgvs map mutalyzer normalize variant
Last synced: 6 months ago · JSON representation

Repository

Tool suite for HGVS variant descriptions

Basic Info
  • Host: GitHub
  • Owner: mutalyzer
  • License: mit
  • Language: Python
  • Default Branch: master
  • Homepage: https://mutalyzer.nl
  • Size: 4.62 MB
Statistics
  • Stars: 46
  • Watchers: 7
  • Forks: 10
  • Open Issues: 34
  • Releases: 0
Topics
bioinformatics convert description hgvs map mutalyzer normalize variant
Created about 7 years ago · Last pushed 8 months ago
Metadata Files
Readme License

README.rst 

Mutalyzer
=========

.. image:: https://img.shields.io/github/last-commit/mutalyzer/mutalyzer.svg
   :target: https://github.com/mutalyzer/mutalyzer/graphs/commit-activity
.. image:: https://readthedocs.org/projects/mutalyzer/badge/?version=latest
   :target: https://mutalyzer.readthedocs.io/en/latest
.. image:: https://img.shields.io/pypi/v/mutalyzer.svg
   :target: https://pypi.org/project/mutalyzer/
.. image:: https://img.shields.io/github/languages/code-size/mutalyzer/mutalyzer.svg
   :target: https://github.com/mutalyzer/mutalyzer
.. image:: https://img.shields.io/github/languages/count/mutalyzer/mutalyzer.svg
   :target: https://github.com/mutalyzer/mutalyzer
.. image:: https://img.shields.io/github/languages/top/mutalyzer/mutalyzer.svg
   :target: https://github.com/mutalyzer/mutalyzer
.. image:: https://img.shields.io/github/license/mutalyzer/mutalyzer.svg
   :target: https://raw.githubusercontent.com/mutalyzer/mutalyzer/master/LICENSE.md

----

Package designed to check descriptions of sequence variants according to the
Human Genome Sequence Variation Society (`HGVS `_)
`guidelines `_.

Please see ReadTheDocs_ for the latest documentation.

.. _ReadTheDocs: https://mutalyzer.readthedocs.io/en/latest/

Owner

  • Name: Mutalyzer
  • Login: mutalyzer
  • Kind: organization
  • Email: info@mutalyzer.nl
  • Location: Leiden

HGVS variant nomenclature checker

GitHub Events

Total
  • Issues event: 12
  • Watch event: 8
  • Issue comment event: 13
  • Push event: 24
  • Pull request event: 1
  • Fork event: 1
  • Create event: 1
Last Year
  • Issues event: 12
  • Watch event: 8
  • Issue comment event: 13
  • Push event: 24
  • Pull request event: 1
  • Fork event: 1
  • Create event: 1

Committers

Last synced: about 2 years ago

All Time
  • Total Commits: 212
  • Total Committers: 5
  • Avg Commits per committer: 42.4
  • Development Distribution Score (DDS): 0.297
Past Year
  • Commits: 43
  • Committers: 3
  • Avg Commits per committer: 14.333
  • Development Distribution Score (DDS): 0.442
Top Committers
Name Email Commits
Mihai M****r@l****l 149
Mihai Lefter m****r@g****m 30
mlefter m****r@l****l 22
jkvis j****s@l****l 9
Mark Santcroos m****s@l****l 2
Committer Domains (Top 20 + Academic)
lumc.nl: 4

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 88
  • Total pull requests: 19
  • Average time to close issues: 5 months
  • Average time to close pull requests: 1 day
  • Total issue authors: 30
  • Total pull request authors: 3
  • Average comments per issue: 1.27
  • Average comments per pull request: 0.05
  • Merged pull requests: 18
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 12
  • Pull requests: 1
  • Average time to close issues: 2 days
  • Average time to close pull requests: N/A
  • Issue authors: 9
  • Pull request authors: 1
  • Average comments per issue: 0.5
  • Average comments per pull request: 0.0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • jfjlaros (39)
  • mihailefter (15)
  • TimD1 (3)
  • Redmar-van-den-Berg (2)
  • fengfeng0918 (2)
  • vrattina (2)
  • flashlab (1)
  • ismailmo1 (1)
  • qRp (1)
  • HLSZim (1)
  • asaki1986 (1)
  • znorgaard (1)
  • jpuntomarcos (1)
  • ptaschner (1)
  • jeremiahwander (1)
Pull Request Authors
  • mihailefter (17)
  • marksantcroos (1)
  • nikhil (1)
Top Labels
Issue Labels
bug (4) question (3) enhancement (1)
Pull Request Labels

Packages

  • Total packages: 2
  • Total downloads:
    • pypi 418 last-month
    • cargo 381 total
  • Total dependent packages: 1
    (may contain duplicates)
  • Total dependent repositories: 1
    (may contain duplicates)
  • Total versions: 13
  • Total maintainers: 2
pypi.org: mutalyzer

Mutalyzer HGVS variant description tools.

  • Versions: 12
  • Dependent Packages: 1
  • Dependent Repositories: 1
  • Downloads: 418 Last month
Rankings
Dependent packages count: 4.8%
Stargazers count: 12.3%
Forks count: 14.2%
Average: 15.5%
Dependent repos count: 21.5%
Downloads: 24.7%
Maintainers (1)
mutalyzer
Last synced: 6 months ago
crates.io: mutalyzer

Placeholder for the Rust port of the Mutalyzer Python tool

  • Versions: 1
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 381 Total
Rankings
Dependent repos count: 21.5%
Dependent packages count: 28.5%
Average: 48.3%
Downloads: 94.8%
Maintainers (1)
zeqianli
Last synced: 6 months ago

Dependencies

docs/requirements.txt pypi
  • docutils <0.18
.github/workflows/ci.yml actions
  • actions/checkout v2 composite
  • actions/setup-python v2 composite
setup.py pypi