Releases | Open Source Science

NCDatasets v0.14.8

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] 9 months ago

NCDatasets v0.14.7

Merged pull requests: - Fix typo (#271) (@Sbozzolo) - Update README.md following move to JuliaGeo (#272) (@gaelforget) - Declare compatibility with netCDF 4.9.3 (#276) (@visr)

Closed issues: - Moving to an org / making a golden standard for NetCDF files in Julia (#57) - CITATION.cff file (#234) - Any simple way to remove or replace variables in a NCDataset? (#260) - Writing a String always prints a warning (#269) - crazy number of allocations on file read (#273)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] 11 months ago

NCDatasets.jl - v0.14.6

NCDatasets v0.14.6

Diff since v0.14.5

Merged pull requests: - Update to Diskarrays 0.4 (#247) (@meggart)

Closed issues: - Assertion failed: (dsid > 0), function attach_dimscales, file nc4hdf.c, line 1417. (#261) - Saving a subset of a file (#268)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] over 1 year ago

NCDatasets.jl - v0.14.5

NCDatasets v0.14.5

Diff since v0.14.4

Closed issues: - Problem connecting to a THREDDS OPeNDAP dataset (#257) - NCDatasets fails to load (#259)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] over 1 year ago

NCDatasets.jl - v0.14.4

NCDatasets v0.14.4

Diff since v0.14.3

Merged pull requests: - Throw informative error for unsupported vtype (#255) (@Sbozzolo)

Closed issues: - More informative changelogs for breaking releases (#242) - is there a variant of load! that accumulates? (#252) - Issues with OpenDAP (#253) - Run Aqua tests (#254)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] almost 2 years ago

NCDatasets.jl - v0.14.3

NCDatasets v0.14.3

Diff since v0.14.2

allow CartesianIndex and CartesianIndices with load! (issue #250, thanks to @haakon-e)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] almost 2 years ago

NCDatasets.jl - v0.14.2

NCDatasets v0.14.2

Diff since v0.14.1

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 2 years ago

NCDatasets.jl - v0.14.1

NCDatasets v0.14.1

Diff since v0.14.0

Alternative masking values (experimental), see https://alexander-barth.github.io/NCDatasets.jl/dev/other/#Fill-values-and-missing-values

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 2 years ago

NCDatasets.jl - v0.14.0

NCDatasets v0.14.0

Diff since v0.13.2

chunksize is now a tuple of integers (was a vector of integers). On input (of defVar and chunking), a vector of integers is still accepted for compatibility.
idimensions key word argument is dropped from write. Use SubDatasets instead to write a subset of a netcdf file.
Many functions and types not specific to NetCDF files (multi-files, views, and load by value) have been moved to CommonDataModel.jl

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 2 years ago

NCDatasets.jl - v0.13.2

NCDatasets v0.13.2

Diff since v0.13.1

Merged pull requests: - NetCDF3 files (64-bit offset NetCDF,...) and unlimited dimensions (issue #231) (#232) (@Alexander-Barth) - Minor docs improvements (#236) (@glwagner) - Corrected the SST image output (#239) (@keduba)

Closed issues: - 64-bit offset NetCDF and unlimited dimensions (#231) - .var[:] always returns a vector (#233) - check presence of attribute and variables (#235) - String-valued dimension incorrectly loaded as matrix of characters (#237)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 2 years ago

NCDatasets.jl - v0.13.1

NCDatasets v0.13.1

Diff since v0.13.0

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] over 2 years ago

NCDatasets.jl - v0.13.0

NCDatasets v0.13.0

Diff since v0.12.17

NCDatasets uses now the DiskArray package which required some API changes. In general, the array API of NCDatasets is now more similar to base Julia in particular:

ncvar[range_indices] = scalar should now be ncvar[range_indices] .= scalar
ncvar2D[:] flattens the data in the 2D NetCDF variable ncvar2D. To read the full array one need to use ncvar2D[:,:] or Array(ncvar2D) (similarly for 3D, 4D... arrays).
Accessing an array out of bounds, new returns a DimensionMismatch exception (previously a NCDatasets.NetCDFError exception was returned)
To grow a NetCDF variable with unlimited dimension, the corresponding index of left-hand side of the assignment cannot be a colon, but should be a range. For example if ncvar is a NetCDF variable where the 2nd dimension is unlimited, ncvar[:,:] = zeros(2,3) should now be replaced by ncvar[:,1:3] = zeros(2,3)

Merged pull requests: - DiskArrays for Variable's (#205) (@tcarion) - Fix checksum docstring (#213) (@navidcy) - Correction of typos (#216) (@keduba) - CompatHelper: add new compat entry for "DiskArrays" at version "0.3" (#229) (@github-actions[bot])

Closed issues: - NCDatasets.jl v0.11+ does not work on PowerPC (#116) - For compressed netcdf, extremely low speed in cdo operation (#206) - LoadError: UndefVarError: NetCDFError not defined (#207) - [Suggestion] easier creation of time axis (#208) - [enhancement] support empty array var[ [] ] (#209) - Using NCDatasets.jl in R (#210) - No warning message when passing wrong keywords to defVar (#212) - @select not work for 4d array (#214) - NCDatasets fails due to build issue on Julia 1.10 (#215) - Significant performance gap between NetCDF.jl and NCDatasets.jl (#218) - Write data fails when the number less than typemax(Datatype) (#226) - Return type Matrix{Union{Missing, Float32}} (#227)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] over 2 years ago

NCDatasets.jl - v0.12.17

NCDatasets v0.12.17

Diff since v0.12.16

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] over 2 years ago

NCDatasets.jl - v0.12.16

NCDatasets v0.12.16

Diff since v0.12.15

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] over 2 years ago

NCDatasets.jl - v0.12.15

NCDatasets v0.12.15

Diff since v0.12.14

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] over 2 years ago

NCDatasets.jl - v0.12.14

NCDatasets v0.12.14

Diff since v0.12.13

Closed issues: - Reading In "Scalar" String (#204)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] almost 3 years ago

NCDatasets.jl - v0.12.13

NCDatasets v0.12.13

Diff since v0.12.11

Closed issues: - Windows: Can't load files with unicode characters (#162) - libcurl.so precompile error. (#191) - Reading time from multi-file dataset very slow (#194) - @select(ds, Dates.month(time) [...]) fails when ds opened by NCDataset(pth) do ds (#196) - Error when writing Array{Float64, 0} (#197) - Values aren't correctly written to disk (#199) - Add support for @select(ds, lat ∈ min..max) (#200) - NCDatasets.@select with MFVariable over date operations (#201) - Problems installing on Julia 1.8.5 (#202) - @select with arbitrary (or a few specific) functions (#203)

Merged pull requests: - Update tutorials.md (#198) (@gaelforget)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 3 years ago

NCDatasets.jl - v0.12.11

NCDatasets v0.12.11

Diff since v0.12.10

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 3 years ago

NCDatasets.jl - v0.12.10

NCDatasets v0.12.10

Diff since v0.12.9

Closed issues: - time variables with "nanoseconds" units fail to load (#192)

Merged pull requests: - Check if NetCDFjll `isavailablebefore loading code (#193) (@glwagner) - Add support for_normalizeindexwithBase.OneTo` (#195) (@charleskawczynski)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 3 years ago

NCDatasets.jl - v0.12.9

NCDatasets v0.12.9

Diff since v0.12.8

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] over 3 years ago

NCDatasets.jl - v0.12.8

NCDatasets v0.12.8

Diff since v0.12.7

Closed issues: - Bug? for function defVar (#186) - Segmentation fault reading file with NCDatasets v0.12.6 (#187)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] over 3 years ago

NCDatasets.jl - v0.12.7

NCDatasets v0.12.7

Diff since v0.12.6

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] over 3 years ago

NCDatasets.jl - v0.12.6

NCDatasets v0.12.6

Diff since v0.12.5

Support for NetCDF 4.9.0

Closed issues: - Time dimension with month units cannot be loaded (#181) - Using ncgen when variable names have spaces (#183)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] over 3 years ago

NCDatasets.jl - v0.12.5

NCDatasets v0.12.5

Diff since v0.12.4

Experimental NCDatasets.@select (subset by e.g. bounding box and date range) and views (of variables and datasets)

Closed issues: - getindex(::NCDataset, ::String) scales poorly with # of variables for unlimited data dimension (#135) - Default missing values (#163) - julia 1.8 beta3, NetCDF_jll v400.802.102+0: Failure to load OPENDAP URL with TLS (#173) - Possible bug trying to save 2D variables (#175) - How do I add variables that are located only in a subset of the coordinates? (#176) - Problem reading time (#177) - How to save a string variable as a scalar? (#180)

Merged pull requests: - set curl options in libnetcdf via NCrcfileinsert (#174) (@visr) - CompatHelper: add new compat entry for "NetworkOptions" at version "1.2" (#178) (@github-actions[bot]) - @select macro for loading data via e.g. a bounding box or by nearest match (#179) (@Alexander-Barth)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] over 3 years ago

NCDatasets.jl - v0.12.4

NCDatasets v0.12.4

Diff since v0.12.3

Slice of a multifile variable is now a subtype of AbstractArray{Union{Missing,T},N} where {T,N} for compatibility with nomissing.

Closed issues: - Call for volunteers to test the updated NetCDF v4.8.1 (in particular for Windows and Apple users) (#165)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] almost 4 years ago

NCDatasets.jl - v0.12.3

NCDatasets v0.12.3

Diff since v0.12.2

Closed issues: - Memory use loading files (#89) - Incorrectly handeling attributes scalefactor and addoffset (#95) - NCDatasets fails to install on Mac OS with brew julia install (#153) - Open in Python but in Julia cannot (#168)

Merged pull requests: - Minor corrections to README.md (#171) (@petershintech) - add capability to read only part of continuous ragged array (#172) (@gaelforget)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] almost 4 years ago

NCDatasets.jl - v0.12.2

NCDatasets v0.12.2

Diff since v0.12.1

Closed issues: - Automatic date detection missing in floating numbers as time (#169)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] almost 4 years ago

NCDatasets.jl - v0.12.1

NCDatasets v0.12.1

Diff since v0.12.0

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] almost 4 years ago

NCDatasets.jl - v0.12.0

NCDatasets v0.12.0

Diff since v0.11.9

Breaking change: when loading a NetCDF variable all values equal to the missing_value attribute are replaced by missing following the CF conventions. Previously, only the values equal to _FillValue were replaced by missing.

Closed issues: - Allow symbols in attrib dicts? (#154) - windows, ERROR: could not load symbol "ncopen" (#158) - Get variable by `standardname` (#160) - load! CFVariable without allocations (#161)

Merged pull requests: - feat: allow Symbol names for attributes (#156) (@adigitoleo) - Symbol attributes (#157) (@adigitoleo) - feat: Add show method for dimensions (#159) (@adigitoleo)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] almost 4 years ago

NCDatasets.jl - v0.11.9

NCDatasets v0.11.9

Diff since v0.11.8

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 4 years ago

NCDatasets.jl - v0.11.8

NCDatasets v0.11.8

Diff since v0.11.7

Closed issues: - Handle CRS (#85) - mbedtls issue in Fedora linux (#126) - Warning: Inactive precompile statement (#142) - Does NCDatasets.jl work with @threads well? (#144) - NetCDF: Not a valid data type or _FillValue type mismatch (NetCDF error code: -45) (#145) - can't find the function ncsave (#146) - Conflicting with GMT.jl package (#147) - fillvalue() is not defined for MFVariable (#148) - Loading time from netcdf file as unixtime directly and NaN for fillvalue? (#151) - ERROR: LoadError: UndefVarError: libnetcdf not defined (#152)

Merged pull requests: - Fix broken cross reference links in documentation (#149) (@adigitoleo)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 4 years ago

NCDatasets.jl - v0.11.7

NCDatasets v0.11.7

Diff since v0.11.6

Closed issues: - Wrong output example for ds.attrib in index.md (#134) - cannot open multi file dataset with deferopen = true (#138) - Prodlem reading byte variable (#139) - Attributes as NCSTRING vs array of NCCHAR (#140)

Merged pull requests: - Reduce compilation time (#136) (@rafaqz) - support symbol indexing for MFDataset as well (#137) (@visr) - Fix a typo and use CF standard names (#141) (@petershintech)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] over 4 years ago

NCDatasets.jl - v0.11.6

NCDatasets v0.11.6

Diff since v0.11.5

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] over 4 years ago

NCDatasets.jl - v0.11.5

NCDatasets v0.11.5

Diff since v0.11.4

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] almost 5 years ago

NCDatasets.jl - v0.11.4

NCDatasets v0.11.4

Diff since v0.11.3

Closed issues: - Bound error in multifile load attempt (#108) - Bounds variable conversion (#117) - NCDatasets fails to load on Julia 1.6-beta1 (#118) - Automatically save Dates (#125) - Allow * syntax for multi file loading (#127) - how to save coordinates (#129) - controlling chunk cache (#130)

Merged pull requests: - mention Glob.jl (#128) (@Datseris) - docs: fix dim field name (#131) (@visr)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] almost 5 years ago

NCDatasets.jl - v0.11.3

NCDatasets v0.11.3

Diff since v0.11.2

Closed issues: - Missing method for NCDatasets.load!(ds["var"],buf,:,1) (#120)

Merged pull requests: - Adding method to load in-place mixing ranges and ints as indices. (#121) (@aramirezreyes)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 5 years ago

NCDatasets.jl - v0.11.2

NCDatasets v0.11.2

Diff since v0.11.1

Merged pull requests: - Change attribute color from blue to cyan (#119) (@briochemc)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 5 years ago

NCDatasets.jl - v0.11.1

NCDatasets v0.11.1

Diff since v0.11.0

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 5 years ago

NCDatasets.jl - v0.11.0

NCDatasets v0.11.0

Diff since v0.10.4

Closed issues: - Convenience selection function for sub-parts of NCDataset (#47) - NetCDF error: NetCDF: Operation not allowed in define mode (NetCDF error code: -39) (#96) - Not possible to use FillValue for variables of type String (#99) - error loading file in edit mode ("a") (#100) - ds[var] in multi-file datasets directly returns the data array (#102) - attempt to transform dimensional information to Ranges instead of Vectors? (#103) - closing an NCDataset based on path (#106) - FillValue not working automatically (#107) - "addoffset" and "scale_factor" is not applied correctly in multi-file .nc datasets (#109)

Merged pull requests: - use the new NetCDF_jll; require julia 1.3 (#88) (@visr) - Update performance.md (#111) (@aramirezreyes) - Update performance.md (#112) (@aramirezreyes) - use Ref instead of size 1 Vector (#113) (@visr)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 5 years ago

NCDatasets.jl - v0.10.4

NCDatasets v0.10.4

Diff since v0.10.3

Closed issues: - Problem on opening multiple files (#94) - Non-automatic convertion of missing values to missing (#97)

Merged pull requests: - CompatHelper: bump compat for "DataStructures" to "0.18" (#98) (@github-actions[bot])

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] over 5 years ago

NCDatasets.jl - v0.10.3

NCDatasets v0.10.3

Diff since v0.10.2

Closed issues: - Printing problems in Juno (#65) - Using ncgen on a file with white spaces in variable names 💣 (#84) - Not loading files when Plots.jl is used (#86) - Dimension ordering (#87) - how to define the dimension value? (#90) - Freeze in _nc_check_size_put_vars (#92)

Merged pull requests: - do not throw when closing closed NCDataset (#93) (@visr)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] over 5 years ago

NCDatasets.jl - v0.10.2

NCDatasets v0.10.2

Diff since v0.10.1

Closed issues: - Is there a way to close all Datasets at one go (#82)

Merged pull requests: - anti-alias doc (#81) (@visr) - require BinDeps 1.0.1 (#83) (@visr)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] almost 6 years ago

NCDatasets.jl - v0.10.1

NCDatasets v0.10.1

Diff since v0.10.0

Closed issues: - High Memory Usage (#75) - Unable to build NCDatasets.jl (#80)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] almost 6 years ago

NCDatasets.jl - v0.10.0

NCDatasets v0.10.0

Diff since v0.9.5

Closed issues: - Asmmetry with Missings and DateTime when loading and saving vars. (#38) - Read a variable of Char Datatype (#39) - Data typed Union{Missing, Dates.DateTime, AbstractCFDateTime, Number} when calling discrete indices (#40) - conflict of netcdf.dll (#41) - Cannot read time variable: "Unsupported calendar: Gregorian" (#42) - cannot install after update because incompatibility with other packages? (#45) - Something is wrong with mean: takes too much time (#48) - Accessing a dataset with a range takes forever...? (#49) - [DOC] How to get the dimensions of a dataset? (#50) - Why is CFVariable a subtype of AbstractArray? (#51) - Make size of a NCDataset/CFVariable return a NamedTuple instead (#52) - Quick question on scalefactor and addoffset (#56) - Can one obtain the dimensions directly from a dataset? (#63) - Question: Is it possible to obtain the dimension values from a CFVariable? (#69) - Ability to not apply add_offset and scale_factor (#70) - Direct convertion to DimensionalArray (#72) - Usage of "attrib" keywords in defVar (#73) - Feature request: attributes(x) returns a dictionary. (#76) - [DOC] How to merge 2 NCDatasets (same dims/attributes) (#77)

Merged pull requests: - Improve README, add TOC, add alias NCDataset (#44) (@Datseris) - update BinDep upper version bound (#46) (@Alexander-Barth) - nsize function for CFVariable (#53) (@Datseris) - Big documentation re-structure and improvement!!! (#55) (@Datseris) - Seperate source code into files with sections (#59) (@Datseris) - Add comment in Manual pointing explicitly to the docs (#62) (@Datseris) - Improve docs: mention the mean problem (#64) (@Datseris) - Improve nomissing functionality (#66) (@Datseris) - CompatHelper: bump compat for "CondaBinDeps" to "0.2" (#68) (@github-actions[bot]) - Install TagBot as a GitHub Action (#74) (@JuliaTagBot) - add merge function (#78) (@Datseris)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 6 years ago

NCDatasets.jl - v0.9.5

v0.9.5 (2019-10-21)

Diff since v0.9.4

Closed issues:

An array of arbitrary size can be appended to a CFVariable (#37)

Scientific Software - Peer-reviewed - Julia
Published by julia-tagbot[bot] over 6 years ago

NCDatasets.jl - v0.9.4

v0.9.4 (2019-10-02)

Diff since v0.9.3

Closed issues:

NetCDF: Operation not allowed in define mode (#36)

Scientific Software - Peer-reviewed - Julia
Published by julia-tagbot[bot] over 6 years ago

NCDatasets.jl - v0.9.3

v0.9.3 (2019-09-19)

Diff since v0.9.2

Closed issues:

Abstract date handling to another package? (#34)
Attempt to use feature that was not turned on when netCDF was built (#32)
Is it possible to get memory mapping in NCDatasets? (#31)
NCDatasets should fail when trying to access a nonexisting index. (#30)

Scientific Software - Peer-reviewed - Julia
Published by julia-tagbot[bot] over 6 years ago

NCDatasets.jl - v0.9.2

Scientific Software - Peer-reviewed - Julia
Published by julia-tagbot[bot] almost 7 years ago

NCDatasets.jl - v0.9.1

Fix issue #28

Scientific Software - Peer-reviewed - Julia
Published by Alexander-Barth almost 7 years ago

NCDatasets.jl - v0.9.0

initial implementation of NCDataset with deferred open
fix default time unit
improve documentations (thanks @Balinus )

Scientific Software - Peer-reviewed - Julia
Published by Alexander-Barth almost 7 years ago

NCDatasets.jl - v0.8.0

Restructure time handling code in the submodule CFTime
Fix issue #21, #23 and #24

Scientific Software - Peer-reviewed - Julia
Published by Alexander-Barth almost 7 years ago

NCDatasets.jl - v0.7.0

load contiguous ragged array
fix issue #22 in ncgen with unlimited dimensions

Scientific Software - Peer-reviewed - Julia
Published by Alexander-Barth about 7 years ago

NCDatasets.jl - v0.6.0

More functions for manipulating DateTime variables following the different CF calendars: monthday and date ranges (Thanks @Balinus )

Scientific Software - Peer-reviewed - Julia
Published by Alexander-Barth about 7 years ago

NCDatasets.jl - v0.5.1

Experimental multi-file support allowing to aggregate files over a specified dimension
Detect ancillary data (like status flags) based on the NetCDF CF Convention

Scientific Software - Peer-reviewed - Julia
Published by Alexander-Barth about 7 years ago