Recent Releases of nanomonsv
nanomonsv - version 0.7.1
- Implement the support for duplex reads.
- Improved breakpoint detection by modifying a one-time Smith-Waterman algorithm.
- Tune-up parameters for each preset (--qv10, qv15, qv20, qv25) for breakpoint detection in one-time smith-waterman algorithm.
- Improved the logic for breakpoint detection for overlapped alignment.
- Python
Published by friend1ws almost 3 years ago
nanomonsv - version 0.7.0
- Improved the logic of the validation step in response to feedback from #35.
- Introduced CRAM format support, as per feedback received in #38.
- Added parameter preset options (--qv10, qv15, qv20, qv25) for PacBio HiFi and ONT Q20+ chemistry.
- Enhanced the robustness of the single breakend SV module procedures, addressing bug #39.
- Python
Published by friend1ws about 3 years ago
nanomonsv - version 0.7.0b1
- Improved the logic of the validation step in response to feedback from #35.
- Introduced CRAM format support, as per feedback received in #38.
- Added parameter preset options (--qv10, qv15, qv20, qv25) for PacBio HiFi and ONT Q20+ chemistry.
- Enhanced the robustness of the single breakend SV module procedures, addressing bug #39.
- Python
Published by friend1ws about 3 years ago
nanomonsv - version 0.6.0
Significantly (2~3 times or more) reduced computational costs by improving the logic that pre-filters unlikely somatic SV candidates during the clustering step.
Fixed error due to using numpy old type (thanks to MartinezRuiz-Carlos #37).
- Python
Published by friend1ws about 3 years ago
nanomonsv - version 0.5.1
- Delete unnecessary intermediate files during multi-processing.
- Small bug fixes.
- Python
Published by friend1ws about 3 years ago
nanomonsv - version 0.5.0
- Use of the control panel is supported.
- Multi-processing in the get command is supported.
- Several bug fixes.
- Python
Published by friend1ws about 4 years ago
nanomonsv - version 0.4.0
- add post-filtering of the SV results.
- add the single-bnd option (still in alpha version experimental).
- generate VCF format file
- Optimizations for consensus generation and realignment validation steps.
- Modified bugs on breakpoint identifications.
- Python
Published by friend1ws over 5 years ago
nanomonsv - version 0.4.0b2
- VCF format modifications.
- Bug fixes on VCF conversion errors.
- Optimizations for consensus generation and realignment validation steps.
- Modified bugs on breakpoint identifications.
- Python
Published by friend1ws over 5 years ago
nanomonsv - version 0.4.0b1
- generate VCF format file
- add post-filtering of the SV results.
- add the single-bnd option (still in alpha version experimental).
- Python
Published by friend1ws over 5 years ago
nanomonsv - version 0.3.0
- Include soft-clipping read around insertions and deletions for supporting reads for the SV candidate identification step.
- Add --use_racon option for the above modification.
- Drastically organized source code.
- Python
Published by friend1ws over 5 years ago
nanomonsv - version 0.2.0
- Make parasail main Smith-Waterman algorithm engine
- Python
Published by friend1ws almost 6 years ago
nanomonsv - version 0.2.0b1
- Make parasail main Smith-Waterman algorithm engine
- Python
Published by friend1ws almost 6 years ago
nanomonsv - version 0.1.2
- Support for NGMLR BAM format.
- Make control files nonmandatory in the "get" command.
- Support for BAM file stored in AWS S3.
- Python
Published by friend1ws almost 6 years ago
nanomonsv - version 0.1.1
- improved input checks and loggings
- Python
Published by friend1ws almost 6 years ago