hic2cool - 0.8.3

Partial fix for zlib decompression issue.

- Python
Published by SooLee about 6 years ago

hic2cool - 0.8.2

Loosened dependency versions for numpy, scipy and pandas.

- Python
Published by SooLee about 6 years ago

hic2cool - 0.8.1

• setup.py now takes dependencies directly from requirements.txt (requirements.txt updated to match the previous setup.py)

- Python
Published by SooLee about 6 years ago

hic2cool - 0.8.0

• multiprocessing option (-p) for convert
• Python2.7 is deprecated

- Python
Published by SooLee over 6 years ago

hic2cool - 0.7.3

- Python
Published by carlvitzthum almost 7 years ago

hic2cool - 0.7.2

- Python
Published by carlvitzthum about 7 years ago

hic2cool - 0.7.1

- Python
Published by carlvitzthum about 7 years ago

hic2cool - 0.7.0

- Python
Published by carlvitzthum about 7 years ago

hic2cool - 0.6.1

- Python
Published by carlvitzthum about 7 years ago

hic2cool - 0.6.0

- Python
Published by carlvitzthum about 7 years ago

hic2cool - 0.5.1

- Python
Published by carlvitzthum over 7 years ago

hic2cool - 0.5.0

- Python
Published by carlvitzthum over 7 years ago

hic2cool - 0.4.2

- Python
Published by carlvitzthum about 8 years ago

hic2cool - 0.4.1

• Fixed error in reading counts from hic files of version 6
• Chromosome names are now directly taken from hic file (with exception of 'all')

- Python
Published by carlvitzthum over 8 years ago

hic2cool - 0.4.0

Large patch, should fix most memory issues and improve runtimes:

Changed run parameters. Removed -n and -e; added -v (--version) and -w (--warnings) * Improved memory usage * Improved runtime (many thanks to Nezar Abdennur) * hic2cool now does a 'direct' conversion of files and does not fail on missing chr-chr contacts or missing * normalization vectors. Finding these issues will cause warnings to be printed (controlled by -w flag) * No longer uses the 'weights' column, which is reserved for cooler * No longer takes a normalization type argument. All normalization vectors from the hic file are automatically added to the bins table in the output .cool

- Python
Published by carlvitzthum over 8 years ago

hic2cool - 0.3.7

Release 0.3.7

- Python
Published by carlvitzthum almost 9 years ago

hic2cool - 0.3.6

Release 0.3.6

- Python
Published by carlvitzthum almost 9 years ago