emirge - Provide new script for default SSU database download and build

We have overhauled the way we download and build a cleaned SILVA SSU database for EMIRGE. SILVA is the recommended small subunit rRNA gene database to use for EMIRGE. This is back-ported from Elmar Pruesse's EMIRGE2 code, and replaces the old emirgedownloadcandidatedb.py with the new emirgemakedb.py.

This new script requires vsearch, as EMIRGE2 is moving to using vsearch in place of usearch.

- Python
Published by csmiller over 9 years ago

emirge - Maintenance Release

Fixes compatibility with BioPython >= 1.67

- Python
Published by epruesse almost 10 years ago

emirge - Fix missing zlib dependency

fixes issue #23

- Python
Published by epruesse over 10 years ago

emirge - Release to pypi

- Python
Published by csmiller over 10 years ago

emirge - bugfix release

• fixes compatibility issue with pysam >= 0.8.4
• fixes providing pre-computed mapping file (issue #19)

- Python
Published by epruesse over 10 years ago