Data

Tools

Indexes

Applications

Experiments

Open Source Science

Recent Releases of nd2reader

nd2reader - Version 3.3.1: fix np.float error

Version 3.3.1: fix np.float error

This package is no longer actively developed because I'm no longer working in this field and can't properly maintain it. If you'd like to help, please see the contributing page for more information.

What's Changed

  • Fix a bug with parsing stitched images. by @zjniu in https://github.com/Open-Science-Tools/nd2reader/pull/60
  • Replace Deprecated np.float with np.float64 in nd2reader by @mansouralawi in https://github.com/Open-Science-Tools/nd2reader/pull/70

New Contributors

  • @zjniu made their first contribution in https://github.com/Open-Science-Tools/nd2reader/pull/60
  • @mansouralawi made their first contribution in https://github.com/Open-Science-Tools/nd2reader/pull/70

Full Changelog: https://github.com/Open-Science-Tools/nd2reader/compare/3.3.0...3.3.1

- Python
Published by rbnvrw about 1 year ago

nd2reader - Various bugfixes

  • Removed support for Python < 3.6
  • Allow input buffers as the ND2Reader's fh argument in addition to filename strings
  • Fixed errors in parsing NDExperiment loops
  • Fixed handling of Z coordinates / levels
  • Better handling of stitched files

- Python
Published by rbnvrw almost 5 years ago

nd2reader - Store version number only in __init__.py

- Python
Published by rbnvrw about 6 years ago

nd2reader - Bugfix release

- Python
Published by rbnvrw about 6 years ago

nd2reader - 3.2.1

Minor release that fixes issue #25

- Python
Published by rbnvrw over 6 years ago

nd2reader - 3.2.0

Special thanks to the contributors @glichtner and @WMAPernice who submitted awesome PRs!

  • Numerous bugfixes: issue #11, issue #12, issue #16, pull request #20, pull request #21, pull request #22
  • The framerate is now calculated from the NDExperiment loop data - this will be closer to the actual framerate as opposed to the set framerate
  • Related to the above point, the acquisition times are now available in the parser
  • Better adherence to the PIMS FramesSequenceND API

- Python
Published by rbnvrw over 6 years ago

nd2reader - 3.0.9

Only print a warning on older/newer ND2 versions

- Python
Published by rbnvrw almost 8 years ago

nd2reader -

- Python
Published by rbnvrw about 8 years ago

nd2reader -

Fixes #4

- Python
Published by rbnvrw about 8 years ago

nd2reader - 3.0.6

  • Field of view (FOV) support, list the fields of view on a v axis (closes #3)

- Python
Published by rbnvrw over 8 years ago

nd2reader -

Bugfix release * add class_priority for pims * Fix cholor channel encoding bug * Catch exceptions for missing metadata fields

- Python
Published by rbnvrw over 8 years ago

nd2reader -

  • Fix imports from pims so that it can be included in pims as a reader.

- Python
Published by rbnvrw over 8 years ago

nd2reader -

  • Only setup certain axes (e.g. 'c') if the size > 1
  • Cache the time steps and add a 'frame_rate' property
  • Add fallback methods to determine the sampling rate in an NDExperiment

- Python
Published by rbnvrw over 8 years ago

nd2reader -

  • Fixed iteration over other axis than t/multiple axes (issue #2)
  • Guess a default axis to iterate over (issue #2)
  • Use the right image group number when there is no z axis

- Python
Published by rbnvrw almost 9 years ago

nd2reader -

  • Fixed the number of frames for ND experiments that include loops without acquisition
  • Include the license files for packaging with conda forge

- Python
Published by rbnvrw almost 9 years ago

nd2reader - 3.0.0: the pims version

This version now uses the pims framework enabling easy access to multidimensional files, lazy slicing, and nice display in IPython.

To get started with the new API, see the documentation.

- Python
Published by rbnvrw almost 9 years ago