Science Score: 10.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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○DOI references
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○Academic publication links
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✓Committers with academic emails
3 of 5 committers (60.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (4.4%) to scientific vocabulary
Keywords
Repository
Extension for Jupyter which integrates igv.js
Basic Info
Statistics
- Stars: 154
- Watchers: 13
- Forks: 12
- Open Issues: 2
- Releases: 0
Topics
Metadata Files
README.md
igv Jupyter Extension
igv-jupyter is tool for JupyterLab which wraps igv.js by way of igv-notebook, and which integrates with g2nb. With this tool you can render IGV in a cell and call its API from a user-friendly web form in the notebook. Track data can be loaded from local or remote URLs, or supplied directly.
For programmatic access to igv.js in a Jupyter notebook, see igv-notebook.
Installation
Requirements:
- python >= 3.6.4
- jupyterlab >= 3.0
bash
pip install igv-jupyter
Owner
- Name: Genomics to Notebook
- Login: g2nb
- Kind: organization
- Website: https://g2nb.org
- Twitter: g2nbteam
- Repositories: 42
- Profile: https://github.com/g2nb
Computational genomics inside notebook documents
GitHub Events
Total
- Watch event: 1
- Issue comment event: 1
Last Year
- Watch event: 1
- Issue comment event: 1
Committers
Last synced: about 1 year ago
Top Committers
| Name | Commits | |
|---|---|---|
| tmtabor | t****r@c****u | 67 |
| Jim Robinson | j****o@b****g | 37 |
| Douglass Turner | d****r@g****m | 25 |
| helgathorv | h****a@b****g | 2 |
| Travis Wrightsman | t****s@w****g | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 52
- Total pull requests: 9
- Average time to close issues: 5 months
- Average time to close pull requests: about 15 hours
- Total issue authors: 36
- Total pull request authors: 4
- Average comments per issue: 5.98
- Average comments per pull request: 0.33
- Merged pull requests: 8
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- a-slide (3)
- jfear (3)
- paul-shannon (2)
- jrobinso (2)
- KhagayN (2)
- callieboskin (1)
- ijoseph (1)
- enushi (1)
- asmlgkj (1)
- Sammi-Smith (1)
- khourhin (1)
- rysterzhu (1)
- jamesbaye (1)
- sooheelee (1)
- Sotdo (1)
Pull Request Authors
- tmtabor (3)
- jrobinso (2)
- turner (2)
- twrightsman (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- pypi 121 last-month
- Total docker downloads: 92,816
- Total dependent packages: 2
- Total dependent repositories: 4
- Total versions: 10
- Total maintainers: 2
pypi.org: igv-jupyter
Jupyter extension for embedding the igv.js genome visualization in a notebook
- Homepage: https://github.com/g2nb/igv-jupyter
- Documentation: https://igv-jupyter.readthedocs.io/
- License: MIT
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Latest release: 2.0.1
published about 4 years ago
Rankings
Maintainers (2)
Dependencies
- igv-notebook *
- ipywidgets >=7.0.0
- jupyterlab *
- jupyter/scipy-notebook 2022-02-17 build