neurodocker
Generate custom Docker and Singularity images, and minimize existing containers
Science Score: 46.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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✓Academic publication links
Links to: zenodo.org -
✓Committers with academic emails
9 of 41 committers (22.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (14.5%) to scientific vocabulary
Keywords
Keywords from Contributors
Repository
Generate custom Docker and Singularity images, and minimize existing containers
Basic Info
- Host: GitHub
- Owner: ReproNim
- License: apache-2.0
- Language: Python
- Default Branch: master
- Homepage: https://www.repronim.org/neurodocker/
- Size: 8.47 MB
Statistics
- Stars: 349
- Watchers: 18
- Forks: 97
- Open Issues: 11
- Releases: 26
Topics
Metadata Files
README.md
Neurodocker
Neurodocker is a command-line program that generates custom Dockerfiles and Singularity recipes for neuroimaging and minifies existing containers.
Please see our website https://www.repronim.org/neurodocker for more information.
See our list of supported software
Build status
You can check the status of the build of the Docker images for several of the neuroimaging software packages that are supported by Neurodocker on this page. This may help with identifying base images that work well for your use case.
Installation
Use the Neurodocker Docker image (recommended):
shell
docker run --rm repronim/neurodocker:latest --help
The Docker images were moved to repronim/neurodocker from kaczmarj/neurodocker.
This project can also be installed with pip:
shell
pip install neurodocker
neurodocker --help
If the pip install command above gives a permissions error, install as a non-root user:
shell
pip install --user neurodocker
Note: it is not yet possible to minimize Docker containers using the Neurodocker Docker image.
Developer installation
Clone the repository and install in editable mode.
git clone https://github.com/ReproNim/neurodocker
cd neurodocker
python -m pip install --no-cache-dir --editable .[all]
Before committing changes, initialize pre-commit with pre-commit install. This will format code with each commit to keep the style consistent. Neurodocker uses black for formatting.
Owner
- Name: Center for Reproducible Neuroimaging Computation
- Login: ReproNim
- Kind: organization
- Website: http://repronim.org
- Repositories: 75
- Profile: https://github.com/ReproNim
GitHub Events
Total
- Create event: 21
- Release event: 2
- Issues event: 35
- Watch event: 23
- Delete event: 14
- Member event: 1
- Issue comment event: 60
- Push event: 127
- Pull request review comment event: 4
- Pull request review event: 6
- Pull request event: 51
- Fork event: 3
Last Year
- Create event: 21
- Release event: 2
- Issues event: 35
- Watch event: 23
- Delete event: 14
- Member event: 1
- Issue comment event: 60
- Push event: 127
- Pull request review comment event: 4
- Pull request review event: 6
- Pull request event: 51
- Fork event: 3
Committers
Last synced: 9 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| jakubk | j****k@m****u | 769 |
| Remi Gau | r****u@h****m | 147 |
| Jakub Kaczmarzyk | j****k@g****m | 132 |
| Steffen Bollmann | s****5 | 53 |
| Satrajit Ghosh | s****a@m****u | 51 |
| mathiasg | m****g@m****u | 17 |
| Yaroslav Halchenko | d****n@o****m | 17 |
| Matteo Visconti di Oleggio Castello | m****c@b****u | 11 |
| dependabot[bot] | 4****] | 8 |
| Repronim Bot | n****y@r****g | 7 |
| Paul Wighton | p****l@c****m | 6 |
| github-actions[bot] | 4****] | 6 |
| Dorota Jarecka | d****a@g****m | 4 |
| Chris Markiewicz | m****z@s****u | 4 |
| Dylan Nielson | a****e@g****m | 3 |
| Ghislain Vaillant | g****l | 3 |
| Michael Notter | m****r@h****m | 3 |
| araikes | a****s@g****m | 3 |
| mchlrnwld | m****d@g****m | 2 |
| Jakub Kaczmarzyk | J****k@J****l | 2 |
| Sooyoung Ahn | s****a@g****m | 2 |
| Matt Cieslak | m****k@g****m | 2 |
| Joshua Scarsbrook | j****k@u****u | 2 |
| David Kennedy | D****y@u****u | 2 |
| Tom Close | T****e@s****u | 2 |
| Ross Mitchell | j****l@g****m | 1 |
| gllmflndn | g****n | 1 |
| jona-sassenhagen | j****n@g****m | 1 |
| pre-commit-ci[bot] | 6****] | 1 |
| sento4000 | 3****0 | 1 |
| and 11 more... | ||
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 150
- Total pull requests: 153
- Average time to close issues: about 2 years
- Average time to close pull requests: 2 months
- Total issue authors: 67
- Total pull request authors: 23
- Average comments per issue: 4.53
- Average comments per pull request: 1.82
- Merged pull requests: 128
- Bot issues: 0
- Bot pull requests: 33
Past Year
- Issues: 9
- Pull requests: 54
- Average time to close issues: about 2 months
- Average time to close pull requests: 7 days
- Issue authors: 8
- Pull request authors: 7
- Average comments per issue: 1.0
- Average comments per pull request: 0.22
- Merged pull requests: 43
- Bot issues: 0
- Bot pull requests: 17
Top Authors
Issue Authors
- yarikoptic (21)
- Remi-Gau (18)
- kaczmarj (14)
- JohannesWiesner (9)
- dnkennedy (4)
- tclose (3)
- mvdoc (3)
- Brainarea (3)
- N-Accumbens (3)
- stebo85 (3)
- djarecka (3)
- effigies (2)
- carolin31 (2)
- dmd (2)
- kaurbhupinder (2)
Pull Request Authors
- stebo85 (39)
- github-actions[bot] (38)
- Remi-Gau (30)
- satra (15)
- yarikoptic (10)
- dependabot[bot] (7)
- mvdoc (6)
- TheChymera (4)
- tclose (4)
- Vbitz (4)
- ghisvail (3)
- kaczmarj (2)
- jakepalmer (2)
- iishiishii (2)
- dnkennedy (2)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 2
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Total downloads:
- pypi 1,254 last-month
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Total dependent packages: 1
(may contain duplicates) -
Total dependent repositories: 4
(may contain duplicates) - Total versions: 22
- Total maintainers: 2
pypi.org: neurodocker
A generic generator of Dockerfiles and Singularity recipes.
- Homepage: https://www.repronim.org/neurodocker/
- Documentation: https://neurodocker.readthedocs.io/
- License: Apache License, 2.0
-
Latest release: 2.0.2
published 7 months ago
Rankings
conda-forge.org: neurodocker
- Homepage: https://github.com/ReproNim/neurodocker
- License: Apache-2.0
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Latest release: 0.9.1
published over 3 years ago
Rankings
Dependencies
- actions/checkout v3 composite
- actions/setup-python v3 composite
- JamesIves/github-pages-deploy-action v4 composite
- actions/checkout v3 composite
- actions/setup-python v3 composite
- actions/checkout v3 composite
- actions/setup-python v4 composite
- actions/checkout v2 composite
- actions/setup-python v2 composite
- actions/checkout v3 composite
- actions/setup-python v4 composite
- python 3.9-alpine build