itkwidgets

An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.

https://github.com/insightsoftwareconsortium/itkwidgets

Science Score: 49.0%

This score indicates how likely this project is to be science-related based on various indicators:

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CITATION.cff file
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codemeta.json file
Found codemeta.json file
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.zenodo.json file
Found .zenodo.json file
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DOI references
Found 1 DOI reference(s) in README
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Academic publication links
Links to: zenodo.org
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Committers with academic emails
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Scientific vocabulary similarity
Low similarity (14.7%) to scientific vocabulary

Keywords

image-analysis imaging insight-toolkit itk jupyter jupyter-widget jupyterlab-extension kitware medical-visualization meshes open-science open-source point-cloud python reproducible-research scientific-computing scientific-visualization

Keywords from Contributors

medical-imaging numfocus

Last synced: 6 months ago · JSON representation

Repository

An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.

Basic Info

Host: GitHub
Owner: InsightSoftwareConsortium
License: apache-2.0
Language: Python
Default Branch: main
Homepage: https://itkwidgets.readthedocs.io/
Size: 76.9 MB

Statistics

Stars: 611
Watchers: 23
Forks: 84
Open Issues: 126
Releases: 71

Topics

Created about 8 years ago · Last pushed 11 months ago

Metadata Files

Readme License

README.md

itkwidgets

ITKWidgets is an elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.

Hello 3D World

Getting Started

Environment Setup

The EnvironmentCheck.ipynb checks the environment that you are running in to make sure that all required dependencies and extensions are correctly installed. Ideally run first before any other notebooks to prevent common issues around dependencies and extension loading.

Installation

To install for all environments:

bash pip install 'itkwidgets[all]>=1.0a55'

Jupyter Notebook

To install the widgets for the Jupyter Notebook with pip:

bash pip install 'itkwidgets[notebook]>=1.0a55'

Then look for the ImJoy icon at the top in the Jupyter Notebook:

ImJoy Icon in Jupyter Notebook

Jupyter Lab

For Jupyter Lab 3 run:

bash pip install 'itkwidgets[lab]>=1.0a55'

Then look for the ImJoy icon at the top in the Jupyter Notebook:

ImJoy Icon in Jupyter Lab

Google Colab

For Google Colab run:

bash pip install 'itkwidgets>=1.0a55'

Example Notebooks

Example Notebooks can be accessed locally by cloning the repository:

bash git clone -b main https://github.com/InsightSoftwareConsortium/itkwidgets.git

Then navigate into the examples directory:

bash cd itkwidgets/examples

Usage

In Jupyter, import the view function:

python from itkwidgets import view

Then, call the view function at the end of a cell, passing in the image to examine:

python view(image)

For information on additional options, see the view function docstring:

python view?

See the deployments section for a more detailed overview of additional notebook options as well as other ways to run and interact with your notebooks.

Learn more

Visit the docs for more information on supported notebooks and integrations.

Owner

Name: Insight Software Consortium
Login: InsightSoftwareConsortium
Kind: organization
Location: Worldwide

Website: https://itk.org
Repositories: 115
Profile: https://github.com/InsightSoftwareConsortium

Community development of the Insight Toolkit (ITK)

GitHub Events

Total

Create event: 2
Release event: 2
Issues event: 7
Watch event: 24
Issue comment event: 32
Push event: 4
Pull request review event: 1
Pull request event: 11
Fork event: 2

Last Year

Create event: 2
Release event: 2
Issues event: 7
Watch event: 24
Issue comment event: 32
Push event: 4
Pull request review event: 1
Pull request event: 11
Fork event: 2

Committers

Last synced: 8 months ago

All Time

Total Commits: 466
Total Committers: 7
Avg Commits per committer: 66.571
Development Distribution Score (DDS): 0.485

Past Year

Commits: 24
Committers: 3
Avg Commits per committer: 8.0
Development Distribution Score (DDS): 0.083

Top Committers

Name	Email	Commits
Brianna Major	b**r@k**m	240
Matt McCormick	m**k@k**m	181
Paul Elliott	p**t@k**m	28
Laryssa Abdala	l**a@g**m	12
Jeremy Tuloup	j**p@g**m	3
Stephen R. Aylward	s**d@k**m	1
Andrey Fedorov	a**v@g**m	1

Committer Domains (Top 20 + Academic)

kitware.com: 4

Issues and Pull Requests

Last synced: 6 months ago

All Time

Total issues: 86
Total pull requests: 158
Average time to close issues: 8 months
Average time to close pull requests: 6 days
Total issue authors: 48
Total pull request authors: 8
Average comments per issue: 3.1
Average comments per pull request: 1.44
Merged pull requests: 144
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 7
Pull requests: 12
Average time to close issues: 1 day
Average time to close pull requests: about 2 hours
Issue authors: 7
Pull request authors: 2
Average comments per issue: 1.57
Average comments per pull request: 1.33
Merged pull requests: 8
Bot issues: 0
Bot pull requests: 0

View more stats

Top Authors

Issue Authors

tbirdso (16)
thewtex (8)
PaulHax (6)
bnmajor (5)
aylward (3)
francesco-ballarin (2)
KumoLiu (2)
brey (2)
Tinanuaa (1)
donny8 (1)
huyuhuster (1)
Alisoltan82 (1)
stefsmeets (1)
idonashino (1)
jianjun0407 (1)

Pull Request Authors

thewtex (86)
bnmajor (68)
PaulHax (23)
jtpio (2)
fedorov (1)
prabhuramachandran (1)
GingerSpacetail (1)
tbirdso (1)

Top Labels

Issue Labels

enhancement (3) bug (1)

Pull Request Labels

Packages

Total packages: 3
Total downloads:
- pypi 5,827 last-month
- npm 21 last-month
Total docker downloads: 3,162

Total dependent packages: 16
(may contain duplicates)
Total dependent repositories: 109
(may contain duplicates)
Total versions: 196
Total maintainers: 3

pypi.org: itkwidgets

Interactive Jupyter widgets to visualize images, point sets, and meshes in 2D and 3D

Homepage: https://github.com/InsightSoftwareConsortium/itkwidgets
Documentation: https://itkwidgets.readthedocs.io/
License: Apache Software License
Latest release: 0.32.6
published almost 3 years ago

Versions: 124
Dependent Packages: 13
Dependent Repositories: 82
Downloads: 5,827 Last month
Docker Downloads: 528

Rankings

Dependent packages count: 1.0%

Docker downloads count: 1.6%

Dependent repos count: 1.6%

Average: 2.5%

Stargazers count: 2.7%

Downloads: 3.2%

Forks count: 4.9%

Maintainers (3)

thewtex itkrobot bnmajor

Last synced: 6 months ago

npmjs.org: itkwidgets

Interactive Jupyter widgets to visualize images in 2D and 3D

Homepage: https://github.com/InsightSoftwareConsortium/itkwidgets#readme
License: Apache-2.0
Latest release: 0.32.6
published almost 3 years ago

Versions: 36
Dependent Packages: 1
Dependent Repositories: 1
Downloads: 21 Last month
Docker Downloads: 2,634

Rankings

Docker downloads count: 0.8%

Stargazers count: 3.0%

Forks count: 3.3%

Downloads: 6.6%

Average: 7.5%

Dependent repos count: 10.3%

Dependent packages count: 20.9%

Maintainers (1)

thewtex

Last synced: 6 months ago

conda-forge.org: itkwidgets

Homepage: https://github.com/InsightSoftwareConsortium/itkwidgets
License: Apache 2.0
Latest release: 0.32.0
published over 5 years ago

Versions: 36
Dependent Packages: 2
Dependent Repositories: 26

Rankings

Dependent repos count: 7.2%

Average: 16.3%

Stargazers count: 17.3%

Dependent packages count: 19.6%

Forks count: 21.0%

Last synced: 6 months ago

Dependencies

.github/workflows/notebook-test.yml actions

actions/checkout v3 composite
actions/setup-java v3 composite
actions/setup-python v3 composite

.github/workflows/publish.yml actions

actions/checkout v3 composite
pypa/gh-action-pypi-publish master composite

docs/requirements.txt pypi

jupyterlite ==0.1.0b17
myst-parser *
pydata-sphinx-theme *

environment.yml conda

nodejs
pip
python 3.10.*