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neutcurve

Fit and plot neutralization curves

https://github.com/jbloomlab/neutcurve

Science Score: 49.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 2 committers (50.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.7%) to scientific vocabulary
Last synced: 7 months ago · JSON representation

Repository

Fit and plot neutralization curves

Basic Info
  • Host: GitHub
  • Owner: jbloomlab
  • License: gpl-3.0
  • Language: Jupyter Notebook
  • Default Branch: master
  • Size: 29.9 MB
Statistics
  • Stars: 9
  • Watchers: 2
  • Forks: 3
  • Open Issues: 0
  • Releases: 2
Created about 7 years ago · Last pushed 8 months ago
Metadata Files
Readme Changelog License

README.rst 

======================================
neutcurve
======================================

.. image:: https://img.shields.io/pypi/v/neutcurve.svg
        :target: https://pypi.python.org/pypi/neutcurve
.. image:: https://github.com/jbloomlab/neutcurve/actions/workflows/test.yml/badge.svg
        :target: https://github.com/jbloomlab/neutcurve/actions/workflows/test.yml
.. image:: https://img.shields.io/badge/code%20style-black-000000.svg
        :target: https://github.com/psf/black
.. image:: https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/charliermarsh/ruff/main/assets/badge/v2.json
        :target: https://github.com/astral-sh/ruff

``neutcurve`` is a Python package written by the `Bloom lab `_ for plotting neutralization curves.

See the `neutcurve documentation `_ for details on how to install and use ``neutcurve``.

Please cite `Loes et al (2024) `_ if you use ``neutcurve`` in your scientific study.

Owner

  • Name: jbloomlab
  • Login: jbloomlab
  • Kind: organization
  • Email: jbloom@fredhutch.org
  • Location: Seattle, WA, USA

Jesse Bloom's lab GitHub account

GitHub Events

Total
  • Release event: 2
  • Push event: 1
  • Pull request event: 1
  • Create event: 1
Last Year
  • Release event: 2
  • Push event: 1
  • Pull request event: 1
  • Create event: 1

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 92
  • Total Committers: 2
  • Avg Commits per committer: 46.0
  • Development Distribution Score (DDS): 0.011
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
jbloom j****m@f****g 91
Kristian Davidsen k****v@u****u 1
Committer Domains (Top 20 + Academic)
uw.edu: 1 fredhutch.org: 1

Issues and Pull Requests

Last synced: 8 months ago

All Time
  • Total issues: 16
  • Total pull requests: 46
  • Average time to close issues: 2 months
  • Average time to close pull requests: 28 minutes
  • Total issue authors: 12
  • Total pull request authors: 2
  • Average comments per issue: 2.81
  • Average comments per pull request: 0.0
  • Merged pull requests: 46
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 2
  • Average time to close issues: N/A
  • Average time to close pull requests: 9 minutes
  • Issue authors: 0
  • Pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • anloes (4)
  • khdcrawford (2)
  • zoehlerbz (1)
  • kmalone2 (1)
  • zxqedu (1)
  • ratnadeep1982 (1)
  • AoifeHughes (1)
  • jbloom (1)
  • xguse (1)
  • Bernadetadad (1)
  • ajgreaney (1)
  • ckikawa (1)
Pull Request Authors
  • jbloom (54)
  • krdav (1)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 174 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 10
  • Total versions: 34
  • Total maintainers: 1
pypi.org: neutcurve

Plot and fit neutralization curves.

  • Versions: 34
  • Dependent Packages: 0
  • Dependent Repositories: 10
  • Downloads: 174 Last month
Rankings
Dependent repos count: 4.6%
Dependent packages count: 10.1%
Average: 12.2%
Downloads: 12.3%
Forks count: 15.4%
Stargazers count: 18.5%
Maintainers (1)
jbloom
Last synced: 8 months ago

Dependencies

setup.py pypi
  • dmslogo >=0.2.1
  • matplotlib >=3.0.0
  • openpyxl >=3.0
  • pandas >=1.0.1
  • pyyaml >=3.13
  • scipy >=1.1.0
  • xlrd >=1.2
test_requirements.txt pypi
  • flake8 * test
  • flake8-bugbear * test
  • flake8-builtins * test
  • flake8-comprehensions * test
  • flake8-docstrings * test
  • flake8-import-order * test
  • flake8-rst-docstrings * test
  • pydocstyle <4 test
.github/workflows/test.yml actions
  • actions/checkout v3 composite
  • actions/setup-python v4 composite
docs/doc_requirements.txt pypi
  • nb2plots *
  • nbsphinx *
  • nbsphinx-link *
  • sphinx *