Science Score: 49.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 5 DOI reference(s) in README -
○Academic publication links
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✓Committers with academic emails
5 of 26 committers (19.2%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (15.0%) to scientific vocabulary
Keywords
Keywords from Contributors
Repository
ISA tools API
Basic Info
- Host: GitHub
- Owner: ISA-tools
- License: other
- Language: Jupyter Notebook
- Default Branch: master
- Homepage: https://isa-tools.org
- Size: 160 MB
Statistics
- Stars: 43
- Watchers: 8
- Forks: 42
- Open Issues: 56
- Releases: 49
Topics
Metadata Files
README.md
The open source ISA metadata tracking tools help to manage an increasingly diverse set of life science, environmental and biomedical experiments that employing one or a combination of technologies.
Built around the ‘Investigation’ (the project context), Study’ (a unit of research) and ‘Assay’ (analytical measurement) general-purpose Tabular format, the ISA tools helps you to provide rich description of the experimental metadata (i.e. sample characteristics, technology and measurement types, sample-to-data relationships) so that the resulting data and discoveries are reproducible and reusable.
To find out more about ISA, see https://isa-tools.org/
To find out who's using ISA and about the ISA development and user community, see www.isacommons.org
The ISA API aims to provide you, the developer, with a set of tools to help you easily and quickly build your own ISA objects, validate, and convert between serializations of ISA-formatted datasets and other formats/schemas (e.g. SRA schemas). The ISA API is published on PyPI as the isatools package.
isatools currently supports Python 3.8+.
Read the Publication...
Read our open access publication "ISA API: An open platform for interoperable life science experimental metadata", published in GigaScience as a technical note
David Johnson, Dominique Batista, Keeva Cochrane, Robert P. Davey, Anthony Etuk, Alejandra Gonzalez-Beltran, Kenneth Haug, Massimiliano Izzo, Martin Larralde, Thomas N. Lawson, Alice Minotto, Pablo Moreno, Venkata Chandrasekhar Nainala, Claire O'Donovan, Luca Pireddu, Pierrick Roger, Felix Shaw, Christoph Steinbeck, Ralf J. M. Weber, Susanna-Assunta Sansone, Philippe Rocca-Serra. ISA API: An open platform for interoperable life science experimental metadata. 2020.11.13.382119; doi: 10.1093/gigascience/giab060
Authors: The ISA team.
License: This code is licensed under the CPAL License.
Repository: https://github.com/ISA-tools/isa-api
ISA team email: isatools@googlegroups.com
ISA discussion group: https://groups.google.com/forum/#!forum/isaforum
Github issue tracker: https://github.com/ISA-tools/isa-api/issues
Using the ISA-API
The documentation to install and use the ISA-API (v0.14.3 and above) can be found here.
For the previous versions (up to v0.11) check the documentation here.
Contributing
The ISA-API is still in development. We would be very happy to receive any help and contributions (testing, feature requests, pull requests). Please feel free to contact our development team at isatools@googlegroups.com, or ask a question, report a bug or file a feature request in the GitHub issue tracker at https://github.com/ISA-tools/isa-api/issues.
Owner
- Name: ISA tools
- Login: ISA-tools
- Kind: organization
- Email: isatools@googlegroups.com
- Location: International Collaboration (leads based at: University of Oxford, UK)
- Website: http://isa-tools.org
- Repositories: 93
- Profile: https://github.com/ISA-tools
GitHub Events
Total
- Issues event: 3
- Watch event: 3
- Issue comment event: 11
- Push event: 22
- Pull request review comment event: 2
- Pull request review event: 5
- Pull request event: 13
- Fork event: 5
- Create event: 4
Last Year
- Issues event: 3
- Watch event: 3
- Issue comment event: 11
- Push event: 22
- Pull request review comment event: 2
- Pull request review event: 5
- Pull request event: 13
- Fork event: 5
- Create event: 4
Committers
Last synced: over 1 year ago
Top Committers
| Name | Commits | |
|---|---|---|
| David Johnson | d****n@o****k | 1,377 |
| zigur | m****n@g****m | 484 |
| Alejandra Gonzalez-Beltran | a****n@g****m | 345 |
| Terazus | b****e@h****m | 284 |
| Philippe Rocca-Serra | p****a@g****m | 131 |
| djcomlab | d****b@g****m | 122 |
| Philippe Rocca-Serra | p****a@o****k | 70 |
| Philippe Rocca-Serra | p****e@h****k | 39 |
| Alfie Abdul-Rahman | a****n@g****m | 37 |
| Massimiliano Izzo | Z****r | 29 |
| Pierrick Roger | p****r@i****m | 15 |
| Philippe Rocca-Serra | p****e@e****e | 14 |
| Philippe Rocca-Serra | p****e@e****l | 12 |
| ntk73 | n****k@u****t | 9 |
| ngn | j****a@g****m | 6 |
| Martin Larralde | m****e@e****r | 4 |
| Yohan Jarosz | y****z@y****r | 4 |
| Pablo Moreno | p****2 | 4 |
| David Jones | d****j@p****m | 1 |
| Nicola Soranzo | n****o@e****k | 1 |
| Nokome Bentley | n****e@s****a | 1 |
| Philippe Rocca-Serra | p****e@e****l | 1 |
| Philippe Rocca-Serra | p****e@e****l | 1 |
| Philippe Rocca-Serra | p****e@e****e | 1 |
| rafael buono | 7****o | 1 |
| Steen Hoyer | j****r@g****m | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 94
- Total pull requests: 98
- Average time to close issues: over 2 years
- Average time to close pull requests: 3 months
- Total issue authors: 31
- Total pull request authors: 9
- Average comments per issue: 1.62
- Average comments per pull request: 1.55
- Merged pull requests: 58
- Bot issues: 0
- Bot pull requests: 3
Past Year
- Issues: 5
- Pull requests: 15
- Average time to close issues: 7 months
- Average time to close pull requests: 8 days
- Issue authors: 4
- Pull request authors: 3
- Average comments per issue: 0.4
- Average comments per pull request: 0.73
- Merged pull requests: 10
- Bot issues: 0
- Bot pull requests: 2
Top Authors
Issue Authors
- proccaserra (38)
- ptth222 (9)
- djcomlab (7)
- agbeltran (6)
- terazus (4)
- knirirr (2)
- casper937 (2)
- rabuono (2)
- Zigur (2)
- podonnellalidyne (1)
- khaug (1)
- jgranduel (1)
- woutervriel (1)
- gordondavies (1)
- jake-emerson (1)
Pull Request Authors
- ptth222 (37)
- terazus (36)
- proccaserra (36)
- Zigur (6)
- knirirr (6)
- dependabot[bot] (4)
- agbeltran (2)
- djcomlab (1)
- J-81 (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 3
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Total downloads:
- pypi 192 last-month
- Total docker downloads: 12
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Total dependent packages: 1
(may contain duplicates) -
Total dependent repositories: 21
(may contain duplicates) - Total versions: 146
- Total maintainers: 5
proxy.golang.org: github.com/isa-tools/isa-api
- Documentation: https://pkg.go.dev/github.com/isa-tools/isa-api#section-documentation
- License: other
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Latest release: v0.14.2
published about 3 years ago
Rankings
proxy.golang.org: github.com/ISA-tools/isa-api
- Documentation: https://pkg.go.dev/github.com/ISA-tools/isa-api#section-documentation
- License: other
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Latest release: v0.14.2
published about 3 years ago
Rankings
pypi.org: isatools
Metadata tracking tools help to manage an increasingly diverse set of life science, environmental and biomedical experiments
- Homepage: https://github.com/ISA-tools/isa-api
- Documentation: https://isatools.readthedocs.io/
- License: other
-
Latest release: 0.14.2
published about 3 years ago
Rankings
Maintainers (5)
Dependencies
- AndreMiras/coveralls-python-action develop composite
- actions/checkout v2 composite
- actions/setup-python v2 composite
- actions/checkout v2 composite
- actions/setup-python v2 composite