Recent Releases of liftover
liftover -
- handle contigs that don't exists without raising an error, accessing a coordinate for a missing chromosome will instead return an empty list
- C++
Published by jeremymcrae over 1 year ago
liftover -
- allow using alternate UCSC mirrors for downloading chain files
- cleaned up code
- C++
Published by jeremymcrae almost 2 years ago
liftover -
updated version for current UCSC chain file locations
- C++
Published by jeremymcrae almost 2 years ago
liftover -
bumped version to build for current python releases (3.8-3.12)
- C++
Published by jeremymcrae over 2 years ago
liftover -
- bumped version due to missing submodules files in pypi version
- C++
Published by jeremymcrae about 4 years ago
liftover -
fix for issue in intervaltree with GCC 11.0
- C++
Published by jeremymcrae over 4 years ago
liftover -
- minor speedups to python function calls
- added convert_coordinate method to match pyliftover API
- C++
Published by jeremymcrae almost 5 years ago
liftover -
now uses HTTPS for downloading chain files from UCSC
- C++
Published by jeremymcrae about 5 years ago
liftover -
- fixed bug where loading multiple chain files shared state between them
- C++
Published by jeremymcrae over 5 years ago
liftover -
- sped up parsing chain file
- avoid second pass over chain file
- use pyproject.toml for easier package installation
- C++
Published by jeremymcrae over 5 years ago
liftover - minor fixes to previous release
- added cython as package requirement
- removed unnecessary c++ declarations
- sanitise target genome input
- fix bug with overmatching at interval end
- added unit tests and started continuous integration tests
- C++
Published by jeremymcrae about 6 years ago
liftover - open chainfile with context handler
minor update
- C++
Published by jeremymcrae about 6 years ago
liftover - converted to cython
This is now much faster as it now opens chainfiles and queries coordinates via c++ code. As a consequence it uses about 1/5th of the memory for storing the parsed chainfile, and queries run in about 1/5th the time as before. This should be able to lift about 500,000 coordinates per second.
- C++
Published by jeremymcrae about 6 years ago