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nltools

Python toolbox for analyzing imaging data

https://github.com/cosanlab/nltools

Science Score: 59.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 3 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ✓
    Committers with academic emails
    3 of 17 committers (17.6%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (10.8%) to scientific vocabulary

Keywords

fmri machine-learning multivariate neuroimaging-data python python-toolbox toolbox

Keywords from Contributors

collaborative-filtering
Last synced: 6 months ago · JSON representation

Repository

Python toolbox for analyzing imaging data

Basic Info
  • Host: GitHub
  • Owner: cosanlab
  • License: mit
  • Language: Python
  • Default Branch: master
  • Homepage: https://nltools.org
  • Size: 125 MB
Statistics
  • Stars: 126
  • Watchers: 9
  • Forks: 44
  • Open Issues: 78
  • Releases: 33
Topics
fmri machine-learning multivariate neuroimaging-data python python-toolbox toolbox
Created about 11 years ago · Last pushed 7 months ago
Metadata Files
Readme License

README.md

Package versioning (Auto-On-Push/PR) Formatting, Tests, and Coverage codecov Codacy Badge DOI Python Versions Platforms

NLTools

Python toolbox for analyzing neuroimaging data. It is particularly useful for conducting multivariate analyses. It is originally based on Tor Wager's object oriented matlab canlab core tools and relies heavily on nilearn and scikit learn. Nltools is only compatible with Python 3.7+.

Documentation

Documentation and tutorials are available at https://nltools.org

Installation

  1. Method 1 (stable)

pip install nltools

  1. Method 2 (bleeding edge)

pip install git+https://github.com/cosanlab/nltools

  1. Method 3 (for development)

git clone https://github.com/cosanlab/nltools pip install -e nltools

Preprocessing

Nltools has minimal routines for pre-processing data. For more complete pre-processing pipelines please see our cosanlab_preproc library built with nipype.

Owner

  • Name: Computational Social Affective Neuroscience Laboratory
  • Login: cosanlab
  • Kind: organization
  • Location: Hanover, NH

GitHub Events

Total
  • Issues event: 3
  • Watch event: 4
  • Delete event: 1
  • Issue comment event: 4
  • Push event: 7
  • Pull request event: 3
  • Fork event: 2
  • Create event: 1
Last Year
  • Issues event: 3
  • Watch event: 4
  • Delete event: 1
  • Issue comment event: 4
  • Push event: 7
  • Pull request event: 3
  • Fork event: 2
  • Create event: 1

Committers

Last synced: about 2 years ago

All Time
  • Total Commits: 1,224
  • Total Committers: 17
  • Avg Commits per committer: 72.0
  • Development Distribution Score (DDS): 0.643
Past Year
  • Commits: 21
  • Committers: 2
  • Avg Commits per committer: 10.5
  • Development Distribution Score (DDS): 0.048
Top Committers
Name Email Commits
Luke Chang l****g@g****m 437
Sam Greydanus s****3@g****m 303
ejolly e****y@g****m 225
ljchang l****g@d****u 169
jcheong j****8@g****m 35
burnash a****v@g****m 17
Luke Chang l****g@M****l 8
Luke Chang l****g@M****l 7
Luke Chang l****g@M****l 6
Andy Chen e****5@g****m 5
Jeroen j****r@d****l 4
Jeroen j****r@H****l 2
Eshin Jolly e****y 2
Luke Chang l****g@l****u 1
Seth Frey m****g@g****m 1
Marissa-Clark m****k@g****m 1
paxtonfitzpatrick p****9@d****u 1
Committer Domains (Top 20 + Academic)
dartmouth.edu: 2 lukes-mbp.kiewit.dartmouth.edu: 1 donders.ru.nl: 1

Issues and Pull Requests

Last synced: 7 months ago

All Time
  • Total issues: 102
  • Total pull requests: 33
  • Average time to close issues: about 1 year
  • Average time to close pull requests: about 2 months
  • Total issue authors: 33
  • Total pull request authors: 5
  • Average comments per issue: 1.07
  • Average comments per pull request: 1.03
  • Merged pull requests: 21
  • Bot issues: 0
  • Bot pull requests: 1
Past Year
  • Issues: 14
  • Pull requests: 2
  • Average time to close issues: N/A
  • Average time to close pull requests: 8 days
  • Issue authors: 5
  • Pull request authors: 2
  • Average comments per issue: 0.14
  • Average comments per pull request: 0.5
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • ejolly (35)
  • ljchang (32)
  • esfinn (2)
  • chuanjigao (2)
  • nirjacoby (2)
  • jcheong0428 (2)
  • briannaaubrey (1)
  • shaangao (1)
  • mpcoll (1)
  • nosratullah (1)
  • davidrzs (1)
  • olcova (1)
  • ErfolgreichCharismatisch (1)
  • lani05 (1)
  • BryanGonzalez262 (1)
Pull Request Authors
  • ljchang (19)
  • ejolly (14)
  • dependabot[bot] (2)
  • paxtonfitzpatrick (1)
  • srken32 (1)
Top Labels
Issue Labels
Easy Fix (12) enhancement (10) bug (8) priority (5) Discussion (3) question (2) help wanted (1) known issue (1)
Pull Request Labels
dependencies (1)

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 2,606 last-month
  • Total docker downloads: 192
  • Total dependent packages: 2
  • Total dependent repositories: 13
  • Total versions: 41
  • Total maintainers: 2
pypi.org: nltools

A Python package to analyze neuroimaging data

  • Versions: 41
  • Dependent Packages: 2
  • Dependent Repositories: 13
  • Downloads: 2,606 Last month
  • Docker Downloads: 192
Rankings
Docker downloads count: 2.1%
Dependent packages count: 3.2%
Dependent repos count: 4.0%
Average: 4.6%
Downloads: 5.7%
Forks count: 6.3%
Stargazers count: 6.6%
Maintainers (2)
ejolly ljchang
Last synced: 6 months ago

Dependencies

requirements-dev.txt pypi
  • black * development
  • pytest * development
  • sphinx * development
  • sphinx_bootstrap_theme * development
  • sphinx_gallery * development
  • sphinxcontrib-napoleon * development
requirements.txt pypi
  • pandas >=1.1.0
.github/workflows/auto_deploy_docs_pypi_onrelease.yml actions
  • actions/cache v2 composite
  • actions/checkout v2 composite
  • actions/setup-python v2 composite
  • crazy-max/ghaction-github-pages v2 composite
  • pypa/gh-action-pypi-publish master composite
.github/workflows/auto_formatting_tests_and_coverage.yml actions
  • actions/checkout v2 composite
  • actions/setup-python v2 composite
  • conda-incubator/setup-miniconda v2 composite
.github/workflows/cron_tests_and_coverage.yml actions
  • actions/cache v2 composite
  • actions/checkout v2 composite
  • actions/setup-python v2 composite
  • conda-incubator/setup-miniconda v2 composite
.github/workflows/manual_deploy_docs_only.yml actions
  • actions/cache v2 composite
  • actions/checkout v2 composite
  • actions/setup-python v2 composite
  • crazy-max/ghaction-github-pages v2 composite
.github/workflows/manual_deploy_pypi_only.yml actions
  • actions/checkout v2 composite
  • actions/setup-python v2 composite
  • pypa/gh-action-pypi-publish master composite