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peakdet

Toolbox for physiological peak detection analyses. Soon to be deprecated in favour of prep4phys

https://github.com/physiopy/peakdet

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    2 of 7 committers (28.6%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (14.1%) to scientific vocabulary

Keywords

hacktoberfest peak-detection physiological-signals physiology

Keywords from Contributors

brain-imaging fmri neuroimaging closember bids brainweb acqknowledge ge labchart physiological-recordings
Last synced: 9 months ago · JSON representation

Repository

Toolbox for physiological peak detection analyses. Soon to be deprecated in favour of prep4phys

Basic Info
Statistics
  • Stars: 28
  • Watchers: 2
  • Forks: 20
  • Open Issues: 9
  • Releases: 8
Topics
hacktoberfest peak-detection physiological-signals physiology
Created almost 10 years ago · Last pushed 10 months ago
Metadata Files
Readme Changelog License Zenodo

README.md

<!-- Phys2BIDS -->

peakdet: A toolbox for physiological peak detection analyses

Apache 2.0 Join the chat at Gitter: https://gitter.im/physiopy codecov

TravisCI See the documentation at: http://peakdet.readthedocs.io

All Contributors <!-- ALL-CONTRIBUTORS-BADGE:END -->

This package is designed for use in the reproducible processing and analysis of physiological data, like those collected from respiratory belts, pulse photoplethysmography, or electrocardiogram (ECG/EKG) monitors.

Overview

Physiological data are messy and prone to artifact (e.g., movement in respiration and pulse, ectopic beats in ECG). Despite leaps and bounds in recent algorithms for processing these data there still exists a need for manual inspection to ensure such artifacts have been appropriately removed. Because of this manual intervention step, understanding exactly what happened to go from "raw" data to "analysis-ready" data can often be difficult or impossible.

This toolbox, peakdet, aims to provide a set of tools that will work with a variety of input data to reproducibly generate manually-corrected, analysis- ready physiological data. If you'd like more information about the package, including how to install it and some example instructions on its use, check out our documentation <https://peakdet.readthedocs.io>_!

License Information

This codebase is licensed under the Apache License, Version 2.0. The full license can be found in the LICENSE <https://github.com/physiopy/peakdet/ blob/master/LICENSE>_ file in the peakdet distribution. You may also obtain a copy of the license at: http://www.apache.org/licenses/LICENSE-2.0.

Contributors ✨

Thanks goes to these wonderful people (emoji key):

Elizabeth DuPre
Elizabeth DuPre
💻 🚇		 Daniel Glen
Daniel Glen
🐛 💻 🚧		 George Kikas
George Kikas
🐛 💻 🤔 🚇 👀 ⚠️		 Ross Markello
Ross Markello
🐛 💻 📖 🤔 🚇 🚧 🧑‍🏫 📆 👀 ⚠️ ✅
m-miedema
m-miedema
👀 🧑‍🏫		 Stefano Moia
Stefano Moia
👀 🐛 💻 🤔 🚇 🧑‍🏫 📆		 Marie-Eve Picard
Marie-Eve Picard
📖 👀 🧑‍🏫		 Taylor Salo
Taylor Salo
🚇
Rachael Stickland
Rachael Stickland
📖 🚇 ⚠️		 Mi-Xue Tan
Mi-Xue Tan
💻 📓 🔌		 Eneko Uruñuela
Eneko Uruñuela
🚇		 xl624
xl624
💻

This project follows the all-contributors specification. Contributions of any kind welcome!

Owner

  • Name: The physiopy community
  • Login: physiopy
  • Kind: organization
  • Email: s.moia.research@gmail.com

A set of tools to operate physiological files in MRI setups

GitHub Events

Total
  • Issues event: 2
  • Watch event: 1
  • Issue comment event: 2
  • Push event: 7
Last Year
  • Issues event: 2
  • Watch event: 1
  • Issue comment event: 2
  • Push event: 7

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 222
  • Total Committers: 7
  • Avg Commits per committer: 31.714
  • Development Distribution Score (DDS): 0.545
Past Year
  • Commits: 37
  • Committers: 4
  • Avg Commits per committer: 9.25
  • Development Distribution Score (DDS): 0.432
Top Committers
Name Email Commits
Ross Markello r****o@g****m 101
Stefano Moia s****a@b****u 60
Ross Markello r****2@c****u 40
smoia s****h@g****m 16
mixue-t m****t 2
Elizabeth DuPre e****2@c****u 2
xl624 l****3@o****m 1
Committer Domains (Top 20 + Academic)
cornell.edu: 2 bcbl.eu: 1

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 35
  • Total pull requests: 51
  • Average time to close issues: 9 months
  • Average time to close pull requests: 3 months
  • Total issue authors: 12
  • Total pull request authors: 10
  • Average comments per issue: 1.34
  • Average comments per pull request: 2.06
  • Merged pull requests: 41
  • Bot issues: 0
  • Bot pull requests: 4
Past Year
  • Issues: 2
  • Pull requests: 2
  • Average time to close issues: N/A
  • Average time to close pull requests: less than a minute
  • Issue authors: 2
  • Pull request authors: 2
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.5
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 1
View more stats
Top Authors
Issue Authors
  • smoia (10)
  • tsalo (6)
  • rmarkello (6)
  • me-pic (4)
  • emdupre (3)
  • maestroque (2)
  • sander314 (1)
  • DominiqueMakowski (1)
  • bbfrederick (1)
  • RayStick (1)
  • vinferrer (1)
  • m-miedema (1)
Pull Request Authors
  • smoia (23)
  • rmarkello (12)
  • pre-commit-ci[bot] (7)
  • afni-dglen (6)
  • me-pic (5)
  • maestroque (4)
  • RayStick (4)
  • emdupre (3)
  • xl624 (1)
  • mixue-t (1)
Top Labels
Issue Labels
Bug (12) Enhancement (11) Paused (5) Good first issue (3) Urgent (3) Discussion (2) Testing (2) Community (2) Internal (2) Refactoring (1) Wontfix (1) Question (1) BugFIX (1)
Pull Request Labels
Internal (25) BugFIX (8) Documentation (7) released (7) Minormod (5) Urgent (5) Testing (4) MInormod-breaking (3) Enhancement (2) hacktoberfest-accepted (2) Paused (2) Refactoring (1)

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 354 last-month
  • Total dependent packages: 2
  • Total dependent repositories: 1
  • Total versions: 8
  • Total maintainers: 1
pypi.org: peakdet

A Python toolbox for the identification and processing of peaks and troughs in physiological data

  • Versions: 8
  • Dependent Packages: 2
  • Dependent Repositories: 1
  • Downloads: 354 Last month
Rankings
Dependent packages count: 3.1%
Forks count: 9.1%
Average: 11.9%
Stargazers count: 12.6%
Downloads: 12.7%
Dependent repos count: 21.7%
Maintainers (1)
smoia
Last synced: over 1 year ago

Dependencies

docs/requirements.txt pypi
  • pandas *
  • sphinx >=1.2
  • sphinx_rtd_theme *
requirements.txt pypi
  • matplotlib *
  • numpy *
  • scipy *
scripts/environment.yml conda
  • matplotlib
  • numpy
  • pillow
  • pip
  • psutil
  • python 3.6.*
  • scipy
  • wxpython