Science Score: 49.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 1 DOI reference(s) in README -
○Academic publication links
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✓Committers with academic emails
5 of 27 committers (18.5%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (11.2%) to scientific vocabulary
Keywords
Keywords from Contributors
Repository
MACS -- Model-based Analysis of ChIP-Seq
Basic Info
- Host: GitHub
- Owner: macs3-project
- License: bsd-3-clause
- Language: Python
- Default Branch: master
- Homepage: https://macs3-project.github.io/MACS/
- Size: 560 MB
Statistics
- Stars: 753
- Watchers: 47
- Forks: 269
- Open Issues: 255
- Releases: 29
Topics
Metadata Files
README.md
MACS: Model-based Analysis for ChIP-Seq
Latest Release:
* Github: 
* Bioconda:
* Debian Med:
Introduction
With the improvement of sequencing techniques, chromatin immunoprecipitation followed by high throughput sequencing (ChIP-Seq) is getting popular to study genome-wide protein-DNA interactions. To address the lack of powerful ChIP-Seq analysis method, we presented the Model-based Analysis of ChIP-Seq (MACS), for identifying transcript factor binding sites. MACS captures the influence of genome complexity to evaluate the significance of enriched ChIP regions and MACS improves the spatial resolution of binding sites through combining the information of both sequencing tag position and orientation. MACS can be easily used for ChIP-Seq data alone, or with a control sample with the increase of specificity. Moreover, as a general peak-caller, MACS can also be applied to any "DNA enrichment assays" if the question to be asked is simply: where we can find significant reads coverage than the random background.
Please find MACS3 documentations through MACS3 website.
Contribute
Please read our CODE OF CONDUCT and How to contribute documents. If you have any questions, suggestion/ideas, or just want to have conversions with developers and other users in the community, we recommend using the MACS Discussions instead of posting to our Issues page.
Ackowledgement
MACS3 project is sponsored by 
. And we particularly want to thank the user community for their supports, feedbacks and contributions over the years.
Citation
Owner
- Name: MACS3 project team
- Login: macs3-project
- Kind: organization
- Email: macs3project@gmail.com
- Twitter: MACS3Project
- Repositories: 4
- Profile: https://github.com/macs3-project
Working group on MACS version 3
GitHub Events
Total
- Issues event: 68
- Watch event: 47
- Delete event: 2
- Issue comment event: 88
- Push event: 32
- Pull request review event: 3
- Pull request event: 13
- Fork event: 6
- Create event: 4
Last Year
- Issues event: 68
- Watch event: 47
- Delete event: 2
- Issue comment event: 88
- Push event: 32
- Pull request review event: 3
- Pull request event: 13
- Fork event: 6
- Create event: 4
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Tao Liu | v****u@g****m | 974 |
| Benjamin Schiller | b****r@g****m | 134 |
| philippadoherty | 9****y | 60 |
| Michael R. Crusoe | m****e@g****m | 8 |
| john | j****8@w****u | 6 |
| Maarten-vd-Sande | M****e | 2 |
| Tao Liu | t****u@T****e | 2 |
| Bjoern Gruening | b****g@g****m | 2 |
| Garrett Graham | g****0@g****m | 2 |
| Michael R. Crusoe | c****e@u****u | 2 |
| Maarten van der Sande | m****e@h****m | 2 |
| Gert Hulselmans | g****s@m****e | 1 |
| Jay Hesselberth | j****h@g****m | 1 |
| Ben Schiller | b****r@g****m | 1 |
| Michael Purcaro | p****o@g****m | 1 |
| Aurelien Jarno | a****2@d****g | 1 |
| Alejandro Barrera | a****a@d****u | 1 |
| Quanhu Sheng | s****h@g****m | 1 |
| Tao Liu | t****u@T****l | 1 |
| Jun Aruga | j****a@r****m | 1 |
| liqingtian | l****i@b****u | 1 |
| Björn Grüning | b****n@g****u | 1 |
| shouldsee | s****e@g****m | 1 |
| daler | d****r@n****v | 1 |
| humburg | p****g@g****m | 1 |
| u2058152 | 7****2 | 1 |
| Theodore Ni | 3****i | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 259
- Total pull requests: 83
- Average time to close issues: over 4 years
- Average time to close pull requests: 5 months
- Total issue authors: 219
- Total pull request authors: 12
- Average comments per issue: 2.19
- Average comments per pull request: 0.6
- Merged pull requests: 78
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 34
- Pull requests: 13
- Average time to close issues: 6 days
- Average time to close pull requests: about 21 hours
- Issue authors: 31
- Pull request authors: 2
- Average comments per issue: 0.88
- Average comments per pull request: 0.08
- Merged pull requests: 13
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- callum-b (4)
- BenxiaHu (4)
- sklasfeld (4)
- diego-rt (3)
- outpaddling (3)
- jma1991 (3)
- bieshuohuawenwo (3)
- taoliu (3)
- igordot (3)
- liuyu988 (3)
- acv21 (3)
- rikrdo89 (2)
- linpei26 (2)
- jowodo (2)
- olechnwin (2)
Pull Request Authors
- taoliu (74)
- mr-c (9)
- philippadoherty (5)
- kaizhang (2)
- ggraham (2)
- tjni (2)
- JohnUrban (2)
- aawdeh (2)
- jemajet (1)
- SaidiWang-JSB (1)
- tyamadat (1)
- bgruening (1)
- u2058152 (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 2
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Total downloads:
- pypi 3,059 last-month
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Total dependent packages: 3
(may contain duplicates) -
Total dependent repositories: 46
(may contain duplicates) - Total versions: 52
- Total maintainers: 1
pypi.org: macs2
Model Based Analysis for ChIP-Seq data
- Homepage: http://github.com/macs3-project/MACS/
- Documentation: https://macs2.readthedocs.io/
- License: BSD License
-
Latest release: 2.2.9
published over 2 years ago
Rankings
Maintainers (1)
pypi.org: macs3
Model Based Analysis for ChIP-Seq data
- Homepage: https://https://macs3-project.github.io/MACS/
- Documentation: https://https://macs3-project.github.io/MACS/
- License: BSD License
-
Latest release: 3.0.3
published about 1 year ago
Rankings
Maintainers (1)
Dependencies
- Cython >=0.29
- codecov >=2.0
- cykhash >=1.0.2
- numpy >=1.17
- pytest >=4.6
- pytest-cov >=2.8
- setuptools >=41.2
- Cython >=0.29
- cykhash >=1.0.2
- numpy >=1.17
- actions/checkout v2.1.0 composite
- uraimo/run-on-arch-action v2.2.1 composite
- actions/cache v2 composite
- actions/checkout v2 composite
- actions/setup-python v2 composite
- actions/upload-artifact v2 composite
- actions/checkout v2 composite
- actions/setup-python v2 composite
- actions/checkout v2 composite
- actions/setup-python v2 composite