susieR - susieR version 0.14.2 released on CRAN

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Published by pcarbo 9 months ago

susieR - susieR version 0.12.35 released on CRAN

Removes the L0Learn dependency since it was no longer available on CRAN.

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Published by pcarbo about 3 years ago

susieR - susieR version 0.12.27 released on CRAN

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Published by pcarbo over 3 years ago

susieR - susieR 0.12.16 released on CRAN (June 27, 2022)

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Published by pcarbo over 3 years ago

susieR - susieR 0.11.92 released on CRAN (November 12, 2021)

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Published by pcarbo over 4 years ago

susieR - susieR 0.11.84 released on CRAN (November 10, 2021)

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Published by pcarbo over 4 years ago

susieR - susieR release published on CRAN (June 2, 2021)

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Published by pcarbo almost 5 years ago

susieR - Version 0.9.0

This version has some interface changes and minor improvements:

• susie_bhat and susie_ss are now merged to susie_suff_stat
• Additional input check and preprocessing options are implemented to susie_rss
• Add a method simple to estimate_prior_method that simply compares specified prior variance with zero and set it to zero if the latter has higher loglikelihood.

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Published by gaow about 6 years ago

susieR - Version 0.8.0

This version improves the sufficient statistics interface susie_ss and susie_bhat, and introduces a new model susie_rss for summary statistics version of SuSiE using RSS model. Specifically:

1. var_y is now replaced by yty in susie_ss
2. susie_z is now replaced by susie_rss using the new RSS model
3. Various checks for input covariance / correlation matrix of X, and for input summary statistics, to ensure they are in the space spanned by non-zero eigenvectors of covariance / correlation matrix of X
4. Add interface to access posterior quantities #84
5. Unify X data object for dense and sparse matrices

(Credits goes to @zouyuxin for 1-4 and @KaiqianZhang for 5)

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Published by gaow almost 7 years ago

susieR - Version 0.7.1

This release is a patch to 0.7.0 that performs filtering by default with susie_get_CS function for effects with estimated V=0.

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Published by gaow almost 7 years ago

susieR - Version 0.7.0

We have improved procedure to estimate prior variance and have set estimate_prior_effect = TRUE by default. Versions prior to 0.7.0 should give similar results if this option is explicitly specified; otherwise analysis using earlier version will likely produce different results from this version. It is suggested that users upgrade to this version, and add estimate_prior_effect = FALSE to susie() function call if it is desired to preserve previous behavior when the prior variance is fixed.

Credit to @KaiqianZhang who did most of the work and assessment to make it happen.

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Published by gaow almost 7 years ago