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sid

Image processing for seed images

https://github.com/yoavram/sid

Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 6 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (6.9%) to scientific vocabulary

Keywords from Contributors

interactive serializer cycles packaging network-simulation shellcodes hacking autograding observability genomics
Last synced: 11 months ago · JSON representation

Repository

Image processing for seed images

Basic Info
  • Host: GitHub
  • Owner: yoavram
  • License: other
  • Language: Python
  • Default Branch: master
  • Homepage: http://sid.readthedocs.org
  • Size: 4.22 MB
Statistics
  • Stars: 1
  • Watchers: 3
  • Forks: 0
  • Open Issues: 3
  • Releases: 0
Created over 12 years ago · Last pushed over 3 years ago
Metadata Files
Readme

README.md

PyPI Supported Python versions License Build Status Documentation Status codecov.io DOI

Sid

Image processing for seed images

Logo

Python script for image processing of plant seed images, specifically Lamium amplexicaule.

Read the docs at http://sid.readthedocs.org/.

Manuscript

Zinger E, Gueijman A, Obolski U, Ram Y, Ruby E, Binder M, Yechieli N, Ohad N, Hadany L. Less fit Lamium amplexicaule plants produce more dispersible seeds. Sci Rep. 2019;9(1):6299. doi:10.1038/s41598-019-42158-1

Dataset

Zinger E, Ram Y, Hadany L, nir ohad. Lamium amplexicaule seed photo set for image characterization. 2019. doi:10.6084/m9.figshare.11446380

Owner

  • Name: Yoav Ram
  • Login: yoavram
  • Kind: user
  • Location: Israel
  • Company: Tel Aviv University

School of Zoology, Faculty of Life Sciences, Tel Aviv University @yoavram-lab

GitHub Events

Total
Last Year

Committers

Last synced: almost 3 years ago

All Time
  • Total Commits: 96
  • Total Committers: 6
  • Avg Commits per committer: 16.0
  • Development Distribution Score (DDS): 0.396
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Yoav Ram y****b@g****m 58
Yoav Ram y****v@y****m 18
Yoav Ram y****m@g****m 12
eyalzing e****r@g****m 4
Yoav Ram g****b@y****m 2
dependabot[bot] 4****] 2
Committer Domains (Top 20 + Academic)
yoavram.com: 2

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 3
  • Total pull requests: 14
  • Average time to close issues: 3 minutes
  • Average time to close pull requests: 4 months
  • Total issue authors: 1
  • Total pull request authors: 2
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.93
  • Merged pull requests: 8
  • Bot issues: 0
  • Bot pull requests: 8
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • yoavram (3)
Pull Request Authors
  • dependabot[bot] (8)
  • yoavram (6)
Top Labels
Issue Labels
Pull Request Labels
dependencies (8)

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 195 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 1
  • Total versions: 6
  • Total maintainers: 1
pypi.org: sid

Image processing for seed images

  • Versions: 6
  • Dependent Packages: 0
  • Dependent Repositories: 1
  • Downloads: 195 Last month
Rankings
Dependent packages count: 10.0%
Downloads: 17.7%
Dependent repos count: 21.7%
Average: 22.2%
Forks count: 29.8%
Stargazers count: 31.9%
Maintainers (1)
yoavram
Last synced: 11 months ago

Dependencies

requirements.txt pypi
  • PyYAML ==5.4
  • argh ==0.26.1
  • click ==5.1
  • colorama ==0.3.3
  • decorator ==4.0.4
  • imageio ==2.6.1
  • matplotlib >=1.0.0
  • numpy >=1.6.0
  • pathtools ==0.1.2
  • pyparsing ==2.0.5
  • python-dateutil ==2.4.2
  • pytz ==2015.7
  • scikit-image ==0.11.3
  • scipy >=0.12.0
  • six ==1.10.0
  • watchdog ==0.8.3
  • wheel ==0.24.0
setup.py pypi
  • add *
  • click *
  • colorama *
  • matplotlib *
  • numpy *
  • pillow *
  • remember *
  • scikit-image *
  • scipy *
  • watchdog *
environment.yml conda
  • alabaster 0.7.6
  • babel 2.1.1
  • colorama 0.3.3
  • coverage 4.0
  • decorator 4.0.4
  • docutils 0.12
  • jinja2 2.8
  • markupsafe 0.23
  • matplotlib 1.4.3
  • networkx 1.10
  • nose 1.3.7
  • numpy 1.10.1
  • pillow 3.0.0
  • pip 7.1.2
  • pygments 2.0.2
  • pyparsing 2.0.3
  • pyqt 4.10.4
  • python 2.7.10
  • python-dateutil 2.4.2
  • pytz 2015.6
  • scikit-image 0.11.3
  • scipy 0.16.0
  • setuptools 18.4
  • six 1.10.0
  • snowballstemmer 1.2.0
  • sphinx 1.3.1
  • sphinx_rtd_theme 0.1.7
  • wheel 0.26.0