obspy - ObsPy 1.4.2 (doi: 10.5281/zenodo.15309143)

Changes: - General: * add support for numpy v2.0 (see #3461) - obspy.core: * util: removed old and outdated 'CatchWarnings' context manager in favor of the better 'CatchAndAssertWarnings' context manager (see #3452) - obspy.clients.fdsn * make sure to use a copy of DEFAULT_SERVICES when initializing a client instance while skipping service discovery, to avoid accidental changes to DEFAULT_SERVICES (see #3493)

- Python
Published by megies 10 months ago

obspy - ObsPy 1.4.1 (doi: 10.5281/zenodo.11093256)

Changes:
- obspy.core:
* fix a bug in response calculation with non-SI input units. With e.g.
"nm/s" as first stage input units (which is unusual, though), the
amplitude of the frequency response was calculated wrongly, not taking
into account the scaling factor needed to get from "nm/s" to "m/s". In
general if this bug would have been encountered before it should have led
to quite obviously wrong results, since it would lead to values that would have been off by at least two orders of magnitude (e.g. in case of "cm/s") or even up to nine orders of magnitude (e.g. in case of "nm/s").
(see #3369)
* fix a bug in Stream.select(inventory=...) (see #3282)
* fix a problem in Stream.plot() failing to remove the "min-max-plot zoom
warning" when interactively zooming into and then again out of a plot with reduced number of points plotted with matplotlib >=3.6 (see #3318)
* fix an issue with Stream.rotate() when there are dots in e.g. station code (see #3373)
- obspy.clients.fdsn:
* update URLs for FDSN web services raspberryshake, ISC and LMU (see #3264,
and #3413)
* properly include server response in error messages on bad requests (see
#3306)
* IRIS/Earthscope: fix all "catalogs" and "contributors" being suffixed with '\n ' (see #3438)
- obspy.clients.nrl:
* better handling of individual stages units when combining sensor and
datalogger response from a full downloaded offline version of the new NRL
v2 (see #3315, #3395)
* add support to use new categories "integrated" and "soh" in new NRL v2
(see #3315)
- obspy.clients.seedlink:
* avoid unnecessary calls to "get_info()" on waveform requests without
wildcards (see #3232)
- obspy.imaging:
* fix a bug that raised an error when plotting beachball patches with
routine "beach" with providing an existing axes instance (for proper
scaling) and saving to vector graphics as pdf/eps (see #2887)
* fix a problem in Stream.plot() failing to remove the "min-max-plot zoom
warning" when interactively zooming into and then again out of a plot with reduced number of points plotted with matplotlib >=3.6 (see #3318)
* fix some issues with bad x-tick positioning and labeling in dayplots
(see #3361)
* fix a bug in Stream.plot() where the plotting method argument (e.g.,
'fast', 'full') was ignored for section-type plots
- obspy.io.gcf:
* Fixed an issue in algorithm to split and encode last few data into GCF
blocks (see #3252)
- obspy.io.sac:
* Fix writing SACPZ from poles and zeros stages with Hertz transfer function type. SAC is expecting the SACPZ data to be in radians/s (see #3334)
- obspy.io.wav:
* Fixed reading of stereo wav files (see #3399)
- obspy.io.win:
* Fixed three bugs when reading 0.5 byte datawide (see #3310)
- obspy.io.xseed:
* Fixed reading SEED frequency-amplitude-phase response lists that are
spread out over multiple blockettes (see #3277)
* Fix reading uncertainties of poles/zeros complex numbers (see #3401)
- obspy.io.zmap:
* Fix writing events with origins that have no depth or depth errors given
(see #3343)
- obspy.signal:
* PPSD: Fix some time slices getting skipped if sampling rate does not align well with the length of one PSD slice. (see #3387)
- obspy.taup:
* bugfix to allow calculations for a model with no discontinuities
(see #3070, #3244)

- Python
Published by megies almost 2 years ago

obspy - ObsPy 1.4.0 (doi: 10.5281/zenodo.6645832)

Changes:

• obspy.core:
  • Minimum supported Python version is now 3.8 (see #3081, #3087)
  • Minimum supported dependency versions are now numpy 1.20, scipy 1.7 and matplotlib 3.3 (see #3081, #3087)
  • response: avoid reporting all unkown units (e.g. "RAD/S") to evalresp as displacement ("DIS") which with default value for "output" ("VEL") leads to evalresp adding a differentiation during response calculation. Instead report undefined unit, which makes evalresp use response as is and essentially ignoring "output" parameter (see #2945)
  • Improved expanded channel information in string representation of Station, e.g. when displaying station in IPython shell (see #3024)
  • limit length of list which records processing info (see #2882)
  • map plots: fix initial map setup, properly pass through user specified options, like "projection" etc (see #3191)
• obspy.clients.fdsn:
  • update URL for NCEDC to https (see #3203)
  • add all valid parameters to getstationsbulk, e.g. geographical constraints (see #3140)
  • do not use autodiscovery of file format in get_stations, unless "format" is set to something we do not recognize (see #3138)
  • fix a bug in routing client that made any request made error out when "debug=True" was set (see #3214)
  • fix raising FDSNTooManyRequestsException when server rejects request due to rate limiting, due to a bug instead a TypeError was raised (see #3219)
• obspy.clients.seishub:
  • submodule removed completely, since it is outdated and not even test servers have been running for years (see #2994)
• obspy.db:
  • submodule removed completely, since mostly being used in discontinued seishub server (see #2994)
• obspy.imaging:
  • spectrogram: change the computation for default window length if not specified to give useful values for sampling rates much higher or lower than 100 Hz (see #3093)
  • spectrogram: better exception type and messages when input signal is too short (see #3093)
  • map plots: fix initial map setup, properly pass through user specified options, like "projection" etc (see #3191)
• obspy.io.alsep:
  • new module for reading data from the Apollo missions stored in ALSEP format (see #3156)
• obspy.io.nlloc:
  • avoid mangling channel/component code when writing nonlinloc phase file, just write full channel code unchanged into nonlinloc's "component" field (see #3223)
  • fix reading nonlinloc hypocenter files written by newer nonlinloc versions, data parsed into Arrivals was wrong (see #3223)
  • read geometrical station azimuth instead of ray takeoff azimuth from hypocenter. This is more robust (ray takeoff values sometimes not accurate at all) and also follows more the QuakeML documentation that states "Azimuth of station as seen from the epicenter" which implies a simple geometrical calculation (see #3224)
  • ignore ray takeoff dip if the stated quality for it is "0 - unreliable". our example data show that values can be blatantly wrong when quality is reported as "0" (see #3224)
  • write timing error as "0.0" if it is not set on a pick, as recommended by nonlinloc's author (see #2371, #3224)
• obspy.io.nordic:
  • add support for writing multiple amplitudes for one pick (only new format) and writes some amplitude lines more compact (see #3075, also #2814)
  • add full support for reading and writing apparent velocity and backazimuth with new nordic format (see #3075)
  • fix comments on angle of incidence vs. takeoff angle (What is called angle of incidence in Seisan is the same as what is usually referred to as takeoff angle, see #3075)
  • add function to check whether phase is valid IASPEI phase in Seisan (#3075)
  • full support for writing high-accuracy origin line (see #3075)
• obspy.io.sac:
  • expose a keep_sac_header flag to the write plugin, which allows users to write a "fresh" SAC header, instead of attempting to merge information from an old SAC header, if one exists. (see #2760)
  • fix writing SACPZ when a channel's sensor filed is unset (see #3187)
• obspy.io.seiscomp:
  • update SeisComP 0.11 and 0.12 schema to potentially speed up sc3ml to qml event catalog conversions (see #3216 and SeisComP/common#74)
• obspy.signal:
  • coincidence trigger: improve speed of template matching and less memory usage (see #3104)
  • Baer picker: fix a bug that could cause crashes on certain versions of libffi (see #3183)
  • polarization analysis: fix calculation of timestamps of the resulting values (see #3211)
• obspy.taup:
  • add option "indicatewavetype" to distinguish S waves in ray paths plot by using wiggly lines for shear waves (see #3047)
  • improved accuracy of ray paths by change of root-finding algorithm in SeismicPhase.refine_arrival (see #3064, #3096)
  • improved accuracy of travel time estimates by using theta function (see #3068)
  • add support for models without a core or inner core (see #1200, #1423, #2086, #2192, #2390, #3070)
  • add support for a wider range of diffracted phases, like SedPdiffKP (see #3085) and PKdiffP (see #3095)
  • allow rapid travel time plotting in plottraveltimes by using precalculated travel times (see #3092)
  • return pierce points for any depth (see #1742, #3072)
  • bug fix for rays which cannot turn due to low velocity at bottom of layer (see #3080)
  • add some checks for bad phases, so "ScScS" is not allowed (see #2774, #3082)
  • bug fix for sources within high slowness regions (see #2976, #3100)

- Python
Published by megies over 3 years ago

obspy - ObsPy 1.3.1 (doi: 10.5281/zenodo.7193374)

Changes: - obspy.core: * Fix exclusion of magnitude 0 events in Catalog.filter (see #3105) * Trace.resample: Changed default for window to "hann" following a name change in scipy, "hanning" is not recognized anymore in newest scipy (see #3117) * Fix different data length for trim/slice methods (see #2608) * Add keepemptytraces option to Stream.trim (see #2608) * Fix missing legend and plot artifacts in Inventory map plots at intersection of equator and prime meridian (see #3067) * Fix a bug in recaculation of overall instrument sensitivity (see #3099) * Fix colored IPython output on Windows (see #3148, #3171) * Add a warning in Trace.remove_response() docs, regarding using water level mechanism with instrument response non-flat with the requested output units (see #3172, #3136) * Fix reusing Catalog/Inventory map plots, i.e. doing multiple cartopy plots with these objects into the same axes (see #3018) * Fix Stream.rotate with multiple-station or multiple-event Streams (see #2623, 3155) - obspy.clients.fdsn: * Fix a bug in get_stations_bulk regarding parameter "includerestricted" (see #3158) * add URL mapping 'EIDA' for http://eida-federator.ethz.ch (see #3050) * Fix issue where "https://" URLs were not matched by the IRIS federator client, resulting in raspberry shake matches being excluded from results (see #3127) * Properly set HTTP Content-Type header in POST requests (see #3169) - obspy.clients.nrl: * deprecate online NRL client as it will stop working in Spring 2023 when old NRLv1 gets taken offline (see #3164) * enable reading from a downloaded full copy of the NRLv2 at http://ds.iris.edu/ds/nrl/ (see #3058) * Fix a bug in recaculation of overall instrument sensitivity after assembling response from separate sensor and datalogger response parts (see #3099) - obspy.imaging: * Scanner/obspy-scan: skip directories without read permission (see #3115) - obspy.io.gse2: * bulletin reading: correctly add Mag2 and amplitudes even if Mag1 is not present (see #2420) - obspy.io.mseed: * fix a bug in endtime calculation when writing fixed flags block information (see #3165) - obspy.io.seg2: * fix reading files that have a string header field with an empty value (see #3174, #3178) - obspy.io.stationxml: * fix a bug that resulted in losing decimation information of base type response stages (see #3159) * enable reading StationXML 1.2 and write new files with schema version 1.2 (see #3153) - obspy.io.wav: * fix writing of wav files with rescale=True and default width=None (see #3029) - obspy.signal: * trigger_onset(): fix a bug when trigger off threshold is higher than trigger on threshold and a trigger is active at the end of the characteristic function (see #2891, #3013) - obspy.signal.PPSD: * show warning on input of a trace that is too short to be processed (see #3073) * fix time comparisons in time restrictions when doing custom stacks, compare less/greater or equal instead of strict less/greater than (see #1477) - obspy.taup: * Fix cycling through colors in ray path plots, now also fixes cartesian plot version (see #2470, #2478, #3041) * Fix slowness layer splits to avoid "TauBranch depths not compatible with slowness sampling." errors. (see #3062, #2682, #1938) * Fix pierce points for 2kmps phases (see #2754)

- Python
Published by megies over 3 years ago

obspy - ObsPy 1.3.0 (doi: 10.5281/zenodo.6327346)

Changes: - obspy.* * no more support for Python 2 (see #2577) * added python 3.9 and 3.10 tests for all platforms, minimal supported python version is 3.7 (#2925, #2489) * removed os.path calls with pathlib library calls (see #2751). * rewrote CI tests to make use of cache (see #2936) * removed individual logging configurations in Obspy, logging can be configured by the user, see documentation of Pythons logging module, only the FDSN mass downloader automatically configures logging as before, but this behavior can be turned off now. The loglevel keywords are therefore deprecated and have no effect anymore (see #2720) * refactored obspy-runtest to use pytest and modified several command line arguments, required to disable image comparisons (see #2489) * removed calls to deprecated NumPy functionality (see #2949, #2981) * cleaned the documentation, build process, and docstrings (see #2662, #2954) * refactored and modernized setup.py (see #2422) - scripts: * SDS report: try to be faster on slow filesystems (see #3009) - obspy.core: * speed up import of obspy core functions (see #2758) * readinventory(): add "level" option to read files faster when less level of detail is needed. currently only implemented for StationXML reading (see #2759) * add option to suppress evalresp sensitivity mismatch warning when removing instrument response (see #2677) * round magnitudes in Catalog/Event string representation to one decimal (see #2742) * add support for pathlib.Path objects in read(), readinventory() and readevents() functions (see #2743) * add a "DEF" option (default units) to Inventory.plotresponse() and Trace.removeresponse() (see #2806) * stream.select(): circumvent wildcard-matching when called with a trace-id without wildcards for quicker trace selection. * Inventory addition now consistently uses shallow copies (#2675, #2694) * removed obsolete wrapper around numpy.loadtxt causing import error with numpy 1.22 (see #2912, #2913) * fix iso8601 regex for issue #2868 to cope with day 360 properly * fix crash when resampling very short traces (see #2926) * response list stages: do not raise an exception if response calculation involves extrapolation outside of frequency range defined by the response list stage but rather only show a warning. raising an exception is the safe route but it also prevents valid calculations as it is up to the user to make sure that signal spectrum is properly suppressed in those frequency ranges outside of the valid response information (see #2988) * fix a bug while checking for valid URI syntax when setting identifiers on inventory type objects (see #2905) - obspy.clients.arclink: * submodule removed completely, since ArcLink was officially deprecated and deactivated on all big datacenters years ago (see #2994) - obspy.clients.fdsn: * introduce fine-grained FDSN client exceptions (see #2653, #2964) * support for "eventtype" parameter in getevents(), as specified in version 1.2 of the FDSN event web service (see #2780) * Hostnames with hyphens and long TLDs are no longer rejected as invalid FDSN server URLs (#2878) * add URL mapping for IRISPH5, IESDMC, GEOFON (alternative to GFZ) (see #2739, #2932) * update RESIF URL mapping to use http and add RESIFPH5 (see #2938) - obspy.clients.filesystem: * add getwaveformsbulk() method to SDS client (see #2616, #2626) * SDS client getlatency(): make one internal check optional which can be a massive speedup on slow filesystems (see #3009) - obspy.clients.seedlink: * basic client: properly terminate after finished getinfo() request (see #2996) - obspy.imaging: * fix section plot in case of a single trace only (see #2764) * removed basemap, now only cartopy is supported for maps (see #2961) * fix day plot when passed a small interval (see #2967) - obspy.clients.filesystem.tsindex: * improvements to leap second file setup and other small fixes (see #2776) - obspy.clients.seedlink: * Fix a bug in basic client when printing debug output (see #2734) - obspy.clients.seishub: * added deprecation message - obspy.db: * added deprecation message * removed from default test suite - obspy.io * add support to resolve the SEED id of picks for nlloc hyp files and nordic files, refactor the same functionality for SeismicHandler evt and HypoDD pha files. Some parameter names therefore changed in the latter, but former parameter names are still supported (see #2251) - obspy.io.css: * open CSS waveforms even if gzip-compressed (see #2736) - obspy.io.gse2: * When reading GSE2 bulletins, station magnitudes now include waveform IDs and have associated station magnitude contributions (see #2718) - obspy.io.hypodd * add PHA write support (see #2687) * add read support for horizontal and vertical origin uncertainty (see #2687) - obspy.io.kinemetrics: * adds the apply_calib argument to the read_evt method to allow obtaining the raw data bits stored in the evt file (see #2582), note this changes the default (wrong!) behaviour, by default the data returned will be the NOT corrected ones. When passing apply_calib=True, the calibration factor will be used. - obspy.io.nordic: * add read and write support for New Nordic format (see #2814) * fix bug where negative magnitudes were not read properly * fix bug where empty hours / minutes / seconds were not read as zero * fix bug where lat/lon-errors were read as lon/lat * fix bug where origin-error was written with RMS rather than timeerror * for reading picks in Old Nordic format, set network code to None (was 'NA' previously) * stop writing waveform-file link to a DUMMY-file by default * add support for I/O of apparent velocity / horizontal slowness * add support for writing of multiple origins * add event-type mapping between Nordic and Obspy/Quakeml (do not fully match) * read pick-weight as pick.extra.nordicpickweight (was arrival.timeweight) and read finalweight into arrival.timeweight (or backazmiuthweight) instead. - obspy.io.reftek: * enable reading data with floating point sampling rates like low sampling rate state-of-health channels (see #2678) * fix reading data in '16' and '32' encodings, when packets do not use the fixed maximum amount of available number of samples per data packet (see #2678) * properly take into account native system byteorder, should fix reading rt130 data on big endian systems (see #2678) - obspy.io.seiscomp: * Add support for SC3ML 0.11 and 0.12, dropped support for SC3ML < 0.6 (see #2284). * Add support for custom tags (see #2284). - obspy.io.sh: * fix appending traces to existing Q file (see #2870) - obspy.io.xseed: * fix a bug reading SEED blockettes 48 and 58 which was likely never encountered (see #2668) * Properly read a given value of 0.0 in station elevation and not replace it with bogus value (see #2763) - obspy.signal.arrayanalysis * fixed an issue in arrayprocessing function returning wrong times for matplotlib versions >= 3.3 due to the epoch change in matplotlib (see #2723) - obspy.signal.crosscorrelation: * Remove deprecated xcorr function, remove deprecated domain keyword argument in correlate function (see #1979) - obspy.signal.spectralestimation.PPSD: * Added special handling option for infrasound data and global infrasound noise models for plotting (see #2740) * Replaced use of deprecated Matplotlib functionality (see #2951) - obspy.signal.trigger: * Improved clarity and speed of several STA/LTA triggers methods, namely classicstaltapy, zdetector, and recursivestalta_py (see #2892) * Added simple AIC method by Maeda (1985)

- Python
Published by trichter almost 4 years ago

obspy - ObsPy 1.2.2 (doi: 10.5281/zenodo.3921997)

Changes: - obspy.core: * Fix wrong values in Stats object after deepcopy or pickle of Stats object for edge cases (see #2601) - obspy.clients.fdsn: * EIDA routing client: fix an issue that leaded to a request of all EIDA data when requesting an invalid, out-of-epochs time window for a valid station (see #2611) * update RASPISHAKE URL mapping to use https * fix a bug of not handling HTTPException in massdownloader (see #2606) * use the client's set timeout in service discovery, too (see #2656) * add URL mapping for FDSNWS at UIB-NORSAR (see #2659) - obspy.clients.filesystem: * sds: continue getall_stations() even if encountering an invalid channel code (see #2636) - obspy.clients.neic: * Make client socket blocking (see #2617) - obspy.io.hypodd: * Allow 60.0 seconds in the second field of origin times, allow NaN in the magnitude field for pha format (see #2627) - obspy.io.nordic: * Fixed a bug raising an exception when reading a nordic file with a non positive-definite covariance matrix (see #2593) - obspy.io.seiscomp: * Fixed an issue where a response has zero zeros or poles (see #2633)

- Python
Published by megies over 5 years ago

obspy - 1.2.1

ObsPy 1.2.1 (doi: 10.5281/zenodo.3706479)

Changes: - fix an installation issue with pip and setuptools version 46 (see #2578) - fix response plots when providing axes=... with a numpy array of Axes instances (see #2579)

- Python
Published by megies almost 6 years ago

obspy - 1.2.0

ObsPy 1.2.0 (doi: 10.5281/zenodo.3674646)

Work on this release was in parts and among others supported by the following institutions/companies and grants (in alphabetical order): - Earthquake Commision of New Zealand (EQC), grant 18/753 - École et Observatoire des Sciences de la Terre - Université de Strasbourg - ETH Zürich - Friedrich-Schiller-Universität Jena - Geoscience Australia - Incorporated Research Institutions for Seismology (IRIS), NSF (SAGE) award :: EAR-1851048 - Institut de Physique du Globe de Strasbourg - Institut de Physique du Globe de Paris - Institutions for Seismology (IRIS) through the PASSCAL Instrument Center at New Mexico Tech. The facilities of the IRIS Consortium are supported by the National Science Foundation under Cooperative Agreement EAR-1261681 and the DOE National Nuclear Security Administration. - Istituto Nazionale di Geofisica e Vulcanologia, Osservatorio Etneo (Italy), Allegato B2 DPC-INGV 2012-2021 Task 10 - Ludwig-Maximilians-Universität München - National Institute for Occupational Safety and Health - Royal Netherlands Meteorological Institute (KNMI) - School of Geography, Environment and Earth Sciences, Victoria University of Wellington - The European Union’s Horizon 2020 research and innovation programme under the ChEESE project, grant agreement No. 823844 - The Royal Observatory of Belgium - U.S. Geological Survey

Changes: - obspy.core: * Inventory objects have been adapted to StationXML 1.1 for details on changes see #2510 and https://github.com/FDSN/StationXML/blob/master/Changes.md * Fixed import of custom plugins (see #2423) * Fixed "==" comparison for Stream and Trace which was very slow in case of traces with >1e6 samples (see #2377) * Added almostequal method for Stream and Trace classes (see #2286). * Casting FDSN identifiers to strings upon setting in the stats dictionary (see #1997). * UTCDateTime objects will now always evaluate equal if their string representations are equal (see #2049). * UTCDateTime objects now issue depreciation warnings when setting any attributes outside of init, or comparing UTCDateTime objects with different precisions (see #2077). * UTCDateTime objects can now accept hour, minute, second, and microsecond values greater than their normal limits by setting the strict keyword argument to False (see #2232). * Fixed UTCDateTime(..., julday=366) for non-leap years. This was returning January 1st of the next year in case of non-leap years being used. Now it properly raises an out-of-bounds ValueError (see #2369) * When reading StationXML/SC3ML, make sure to properly read empty string fields as empty strings instead of "None" (see #2519 and #2527) * Better ISO8601 detection for UTCDateTime objects and UTCDateTime(..., iso8601=False) now completely disables ISO8601 handling (see #2447) * Added replace method to UTCDateTime class (see #2077). * Added remove method to Inventory class (see #2088). * Added id property to WaveformStreamID (see #2131). * Added _str__ and reprpretty_ method for Comment class (see #2115) * Added eq to QuantityError so empty instances equal None (see #2185). * Reworked the event scoped resource identifiers for the event classes hopefully fixing all edge-cases (see #2091). * Added a hook to allow users to customize finding objects for resourceids which are not found via the normal means (see #2279). * Calling Stream.write(...) on an empty stream will now raise an ObsPyException consistently across all I/O plugins (see #2201) * Stream.getgaps() will now properly report gaps within Traces that have masked arrays (i.e. Traces that have been merged without a fill value, see #2299 and #2300). * Added copy method to Inventory class (see #2322). * The Response.recalculateoverallsensitivity() method now accepts integers (see #2338, #2343). * Added wildcard and url support to readinventory (see #2326). * Modified stream.getgaps() to deal with overlaps correctly (see #1403) * Added option "labelepochdates" to Inventory/Network.plotresponse() to optionally add channel epoch start/end dates to legend labels (see #2309) * Deprecated the convertidtoquakemluri, regenerateuuid, and getquakemluri methods of the ResourceIdentifier class (see #2303). * Added getquakemluristr and getquakemlid methods to the ResourceIdentifier class (see #2303). * New method to create response objects directly from poles and zeros (see #1962). * Added Stream.stack method (see #2440). * Added a component field to the Stats object which allows to get and set the last character of the SEED channel (see #2484). * Fixed a bug in Stream.plot(type='section', reftime=..., ...) that caused wrong relative start times of traces relative to given reftime (see #2493) * Fixed a Windows-specific path case issue in a helper function that returns a list of untracked files in the git repository (see #2296) * Fix a bug that was causing an exception being raised in Response.plot() because a float was being passed down to numpy.linspace as length of array (see #2533) * Geographic select of inventory/network/station (see #2515) * Select traces in Stream based on an Inventory (see #2531) - obspy.clients.fdsn: * Add new `discoverservices` boolean flag to the Client, which allows the Client to skip the initial services query at instantiation. This can reduce the load on service providers, but skips checks against unsupported query parameters. * Adding more location codes to the default priority list in the mass downloader (see #2155, #2159). * The mass downloader now raises a warning if all channels from a station have been deselected due to the default location priorities setting. This is a pure usability improvement as it has been confusing users (see #2159). * Make sure that streams fetched via FDSN are properly trimmed to user requested times if data center serves additional data around the start/end (see #1887, #2298) * Fix a problem that could spam subprocesses that were not closed in routed clients (see #2342 and #2344) * Make it possible to use signed EIDA tokens and also skip token validation completely (see #2297) * Adding a mapping for RASPISHAKE - obspy.clients.filesystem.tsindex: * Add new Client & Indexer modules based on IRIS time series index (see #2206) - obspy.clients.iris: * Results of distaz method are now returned as native floats (see #2499) - obspy.clients.neic: * Properly use specified timeout value (see #2450) - obspy.clients.seedlink: * Add method "getinfo()" to fetch information on what networks/stations/locations/channels are served by the seedlink server (see #2405) * "getwaveforms()" can now be used with '*' and '?' wildcards in any part of requested SEED ID, i.e. network, station, location and channel (see #2405) - obspy.clients.seishub: * Properly handle fetching poles and zeros in presence of multiple metadata files for a given station (see #2411) - obspy.geodetics: * New utility function `insidegeobounds()to check whether an object is inside a geographic bound (see #2515) - obspy.imaging: * obspy-scan can now be used with wildcarded SEED IDs when specifying what to plot after scanning data (see #2227) * Fix a problem in Scanner when loading npz on Python3 that was written on Python2 (see #2413) * Fix an issue that could make small landmasses not get plotted in basemap plots (see #2471, #2477) * Fixed a bug in Stream.plot(type='section', reftime=..., ...) that caused wrong relative start times of traces relative to given reftime (see #2493) - obspy.io: * Added read support for receiver gather format v. 1.6 (see #2070) * Added read support for FOCMEC 'out' and 'lst' files (see #2156) * Added read support for HypoDD 'pha' files (see #2378) - obspy.io.arclink: * Accommodate change in SeisComP3 publicID delimiter from '#' to '/' in ArclinkXML (see #2552) - obspy.io.dmx: * Add read support for INGV's DMX format (see #2452) - obspy.io.gcf: * Fixes Python 3.8 compatibility of GCF reader. (see #2505) - obspy.io.mseed: * Fix a bug resulting in an infinite loop when trying to read a FullSEED file without any data records (see #2534 and #2535) * Add ability to write int64 data to mseed if it can safely be downcast to int32 data, otherwise raises ObsPyMSEEDError. (see #2356) * The recordanalyzer can now detect calibration blockettes 300, 310, and 320 (see #2370). * Can now write zero sampling-rate traces. (see #2488, 2509) - obspy.io.nordic: * Add ability to read and write focal mechanisms and moment tensor information. (see #1924) * Add explicit warnings regarding unsupported sections of Nordic files. * Fix mapping of magnitude-types between MS to S and Ms to s. * Output preferred origin when writing to Nordic format instead of using the first origin (see #2195) * Include high-accuracy phase-pick reading and writing - high-accuracy is now the default phase-writing format, a boolean flaghighaccuracy has been added to turn this off. (see #2351 and #2348) * Allow long-phase names (both reading and writing) - longer than 4 char. (see #2351) * Include AIN as takeoff-angle when reading and writing nordic files (see #2404). * Add error ellipses and read high-accuracy hypocenter lines (see #2451) * Fix the incorrect handling of events missing pick evaluation information (see #2520) - obspy.io.reftek: * Implement reading reftek encodings '16' and '32' (uncompressed data, 16/32bit integers, see #2058 and #2059) - obspy.io.rg16: * Implement module to read waveforms and headers from fcnt format (see #2265). * Fix reading when start+endtime are inside one data packet (see #2485). - obspy.io.sac: * Fix bug writing inventory with SOH channels to SACPZ (see #2200). * Blank-pad character header variables, as opposed to NUL-padding them, to comply with SAC behavior (see #2543). - obspy.io.segy: * Raise nicer error messages when header packing fails (see #2194, #2196). * Show nice error message when trying to write a trace with too many samples in it (see #2358, #1393) - obspy.io.seg2: * Handle data format code 3 trace data (#2022, #2385). * Improve parsing of free-form entries (#2385). * Fix non-native endian data loading (#2385). - obspy.io.seiscomp: * Adding support for SC3ML 0.10 (see #2024). * Update xsl to allow conversion of amplitude picks not associated with origins (see #2273). * Very large performance improvement reading large sc3ml inventory files by pre-indexing sensors, dataloggers and responses and reducing lxml calls (see #2296). * When reading StationXML/SC3ML, make sure to properly read empty string fields as empty strings instead of "None" (see #2519 and #2527) - obspy.io.sh: * Add read support for SeismicHandler EVT event files (see #2109) - obspy.io.shapefile: * Add possibility to add custom database columns when writing catalog or inventory objects to shapefile (see #2012 and #2305) - obspy.io.stationxml: * When reading StationXML/SC3ML, make sure to properly read empty string fields as empty strings instead of "None" (see #2519 and #2527) * Inventory objects have been adapted to StationXML 1.1 for details on changes see #2510 and https://github.com/FDSN/StationXML/blob/master/Changes.md - obspy.io.quakeml: * Allow writing invalid ids but raise a warning (see #2104, #2090, #2093, #1872). * Skip invalid enumeration values during reading but raise a warning. (see #2106, #2098, #2095) * Catalogs with empty event description objects can be round-tripped (see #2339, #2340). * Correctly handle QuakeML native namespaces (if they are not matching the document root's namespace) as custom namespaces and parse them into .extra` (see #2466) - obspy.io.xseed: * Ability to parse SEED files with extra newlines between blockettes (see #2383) - obspy.signal.crosscorrelation: * Add new correlate_template() function with 'full' normalization option, required for correlations in template-matching (see #2035 and #2042). * 'domain' parameter in correlate function is deprecated in favour of new 'method' parameter to be consistent with recent SciPy versions (see #2042). * Add correlate_stream_template() and correlation_detector() functions to detect events based on template matching (see #2315) - obspy.signal.PPSD: * Changed numpy-based serialization as to not require pickling (see #2424). * Fixed exact trace cutting for PSD segments (see #2040). * Timestamp representations internally and in npz I/O were changed to use integer nanosecond POSIX timestamps to avoid any potential floating point inaccuracies and since this is also what UTCDateTime is based on nowadays (see #2045). * Fixed the check for new PSD slices whether they should be added or whether they would add unwanted duplicated data (see #2229). * Fix period_lim option when xaxis_frequency=True (see #2246). * Added allow_pickle parameter to PPSD.add_npz and PPSD.load_npz and set its default to False (see #2457). * Added representation of earthquake models from Clinton & Heaton (2002) in 'plot()' method using option 'showearthquakes' (see #2455). - obspy.signal.polarization: * Fix an issue with covariance matrix in vidale algorithm and make adaptive windowing opt-out (see #2565) * Fix an issue in selecting Z/N/E traces from given stream (see #2365) - obspy.signal.trigger: * Fix a bug in AR picker (see #2157) * Option to return Baer-Kradolfer characteristic function from pkmbaer function added (see #2341) - obspy.taup: * Fix cycling through colors in ray path plots (see #2470, #2478) * Fix a floating point issue on IBM machines (see #2559, #2560)

- Python
Published by megies almost 6 years ago

obspy - 1.1.1

This is the first and only bug fix release in the 1.1.x series.

Full changelog:

1.1.1: (doi: 10.5281/zenodo.1040770) - General: * Tests pass with numpy 1.14 (see #2044). * Map plots now also work with matplotlib >= 2.2 (see #2089). - obspy.core: * UTCDateTime now raises a meaningful exceptions when passing invalid or out-of-bounds 'julday' during initialization (see #1988) * Fix pickling of traces with a sampling rate of 0 (see #1990) * readinventory() used with non-existing file path (e.g. typo in filename) now shows a proper "No such file or directory" error message (see #2062) * Fix Trace.times(type='matplotlib') being slow (see #2112) * readevents() and readinventory() now trial most common plugins first (QuakeML/StationXML, ...) in case of automatic file format detection (i.e. when file type was not explicitly specified, see #2113) * Event instances with Origin instances that have do not have defined latitude/longitude attributes will no longer raise a TypeError when creating a string representation (see #2119 and #2127). * Fix Stream.getgaps() when a trace is completely overlapping another trace (see #2218). * Fix Exception when comparing ComparingObjects (see #2220). * Fix UTCDateTime.strftime() when year is <1900 on Python 2 (see #2167) * Inventory objects are more convenient to create now. Network, station, and channel codes can now be optional. Additionally the source parameter of inventories must no longer be specified at init time (see #2307, #2314). - obspy.clients.arclink: * Raise a warning at import time that the ArcLink protocol will be deprecated soon (see #1987). - obspy.clients.fdsn: * Mass downloader: Priority lists are now correctly overwritten if channel and/or location are set (see #1810, #2031, #2047). * A few fixes and stability improvements for the mass downloader (see #2081). * Fixed routing startup error when running under certain locales (see #2147) * Update the IPGP mapping (see #2268). * Adding a mapping for the KNMI (see #2270) services. - obspy.clients.nrl: * Set input units of overall sensitivity to input units of first stage in NRL.getresponse() (see #2248) - obspy.geodetics: * Fix the vincenty inverse calculation for equatorial lines (see #2282). - obspy.imaging: * Normalize moment tensors prior to plotting in the mopad wrapper to stabilize the algorithm (see #2114, #2125). * fix some map plotting issues with cartopy and local projection (see #2193, #2204) - obspy.io.ascii: * Fixes an issue with the time representation (see #2165, #2179). - obspy.io.cnv: * Bugfix when phasemapping is passed as argument when writing a Catalog object to CNV (see #2001) - obspy.io.css: * Fix automatic filetype detection (see #2160 and #2162) - obspy.io.gcf: * Fix reading stream ID for station/channel code in header (see #2289, #2311) * Fix bitmask in getting compression code (see #2290, #2310) - obspy.io.mseed: * Ability to read files that have embedded chunks of non SEED data. (see #1981, #2057). * Fix util.getstartandendtime returning sample rate = 0 when sample rate = 1 (see #2069) * Avoid showing invalid warnings when guessing endian during parsing timestamps (see #1988) * util.getrecordinformation() now works correctly for negative sampling rate factors and multipliers (see #2030, #2191). - obspy.io.nordic * Bug-fix for amplitudes without magnitudehint (see #2021) * Bug-fix for wavefiles with full path stripping (see #2021) * Bug-fix for longitudes between -100 and -180 (see #2197) - obspy.io.reftek: * Fix problems reading some Reftek 130 files, presumably due to floating point accuracy issues in comparing timestamps. Internal representation of time stamps is changed to integer nanosecond POSIX timestamp (see #2036, #2038, #2105) * Fix a bug that prevents reading files that have no data in first channel (see #2101) - obspy.io.sac: * Allow passing on the byteorder flag from the top-level obspy.read() function (see #2285, #2292). - obspy.io.seiscomp: * Fix inventory read when maxClockDrift is unset in SC3ML (see #1993) * Fix the reading of FIR coefficients when multiple whitespaces in SC3ML (see #2259) * Fix the reading of the poles and zeros when multiple whitespaces in SC3ML (see #2260). * Fix reading files with zero sampling rates (see #2294 and #2293) * Fix divide by zero error when parsing sc3ml files of zero sampling rage (see #2294). - obspy.io.stationxml * Allow writing of dates before 1900 also on Python 2 (see #2013, #2015). * Write the UTC time zone specifier to all times (see #2015). * Units of first response stage as well as unit response stages are now determined with some heuristics (see #2250, #2318). - obspy.io.xseed: * Third condition to split blockettes when reading RESP files. Now more forgiving for slightly different files (see #2170, #2189) - obspy.signal: * Allow singular COUNT units in evalresp (see #2003, #2011). * Fix an evalresp issue in case of an analog PAZ stage zero denominator (see #2171 and #2190) * PPSD: for safety reasons, raise an ObsPyException if trying to read a PPSD npz file that was written with a newer version of the npz representation than is used by current ObsPy version (see #2051) * The arpick() trigger function now raises an error if the three data arrays don't have the same length (see #1801, #2148). * fix a precision issue in AR picker in case of low amplitude input (see #2252 and #2253) - obspy.taup: * Fallback to linear slowness interpolation for very small and shallow layers (see #2126, #2129). * Fix bug preventing constant-velocity models with discontinuities at every layer boundary from being built (see #2264). * More robust resize method so TauPy now works properly on Python 3.7 (see #2280, #2319).

- Python
Published by megies about 7 years ago

obspy - 1.1.0

This is a major release with a lot of new features, bug fixes, and general improvements and we strongly recommend all users to update. Follow this link to learn more:

What's New in ObsPy 1.1

Full Changelog

1.1.0: (doi: 10.5281/zenodo.165135) - General: * Read support for Guralp Compressed Format (GCF) waveform data, obspy.io.gcf (see #1449) * Read support for Reftek 130 (rt130) waveform data, obspy.io.reftek (see #1433) * Add Nordic format (s-file) read/write (see #1517) * Read and write support for events in the SCARDEC catlogue format (see #1391). * Read support for IASPEI ISF ISM 1.0 Bulletin event data, (see #1946) * Write support for AH (Ad Hoc version 1) format (see #1754) * Client to access the Nominal Response Library (NRL) (see #1185). * `obspy.read_inventory()` can now read dataless SEED and RESP files (see #1185). * change version number scheme for scenarios when no official version number can be determined (see #1889 and #1916) * Support for the IRIS Federator and EIDAWS FDSNWS web routing services (see #1779 and #1919). - obspy.core: * UTCDateTime is now based on nanoseconds (long) instead of a unix timestamp in microseconds (float) - resulting in higher precision and support for years 1-9999 (see #1325) * Ensure that Trace.data is always C-contiguous in memory (see #1732) * Event/ResourceIdentifier is now object aware, meaning even if two objects share a resource_id the distinct objects will be returned with the get_referred_object method provided both are still in scope. If one of the objects gets garbage collected, however, a warning will be issued and the behavior will be the same as before (see #1644). * Better error message when attempting to write invalid QuakeML resource ids (see #1699). * Stream/Trace.write() can now autodetect file format from file extension (see #1321). * New convenience property `.matplotlib_date` for `UTCDateTime` objects to get matplotlib datetime float representation (which can be used in time-based matplotlib axes, e.g. by Stream.plot(); see #1339). * Trace.times() has new options `type` and `reftime` to support fetching an array of sampletimes in various different timing varieties ("relative": the old default, float relative to trace starttime or `reftime` in seconds; "utcdatetime": absolute times as UTCDateTime objects; "timestamp": array of float POSIX timestamps, compare `UTCDateTime.timestamp`; "matplotlib": array of float matplotlib dates, useful for plotting on matplotlib time axes; see #1307) * A trace's stats.network/station/location/channel can now also be set in one line using a SEED ID string (e.g. `trace.id = "GR.FUR..HHZ"`, see #1439). * Instrument correction for response list stages originating from inventory objects (see #1514). * `Stream.rotate(...)` can now also be used to rotate unaligned channels to Z-N-E, given an Inventory (see #1310) * Non finite floats (NaN, inf, -inf) can now no longer be set for all event objects (see #1597). * Instrument responses can now also be calculated for a given list of frequencies (see #1598). * Order of extra tags for event type classes serialized to QuakeML can now be controlled by using an OrderedDict (see #1617) * Bode plots can now optionally plot the phase in degrees (see #1763). * `Stream.select()` now also works on the component level if channels only have one letter (see #1847). * Now strips all invalid characters from the temporary filenames used for downloading data using the `read_X()` methods (see #1958). - obspy.clients.earthworm: * Much faster trace unpacking (see #1762). - obspy.clients.fdsn: * empty SEED codes (e.g. ``network=''``) will now be properly sent to the server as options and not omitted, which led to wildcard matching (for details see #1578) * The mass downloader now has `exclude_networks` and `exclude_stations` arguments to not download certain pieces of data. (see #1305) * The mass downloader can now download stations that are part of a given inventory object. * The mass downloader now also works with restricted data. (See #1350) * No data (HTTP 204) responses now raise `FDSNNoDataException` rather than the more general `FDSNException`. * Fixing cross implementation of bulk waveform and station requests (see #1685). * Adding mappings for the TEXNET (see #1852) and the ICGC (see #1902) services. * Support for the non-standard EIDA token authentication (see #1928). - obspy.imaging: * The functionality behind the `obspy-scan` command line script has been refactored into a `Scanner` class so that it can be reused in custom workflows. (see #1444) - obspy.imaging.cm: * new colormap: viridis_white. This is a modification of viridis that goes to white instead of yellow but remains perceptually uniform. It is especially useful for printing when an image should merge with the white background. - obspy.imaging.waveform: * Support for filling the wiggles when plotting sections (horizontal and vertical, see #1445). - obspy.io.arclink: * Read support for Arclink Inventory XML (see #1539) * default for `route` parameter in metadata requests is changed to `False` (see #1756) - obspy.io.ascii: * Custom formatting of sample values when writing SLIST and TSPAIR. - obspy.io.datamark: * Renamed without deprectation to obspy.io.win to match its original name. Datamark is a datalogger, saving the WIN format. - obspy.io.gse2: * Read support for GSE2.0 bulletin (see #1528) - obspy.io.nlloc: * Also parse author information and COMMENT line (see #1484) * Fix reading hypocenter files created by NonLinLoc versions of the 6.0.x beta branch (see #1760 and #1783) - obspy.io.quakeml: * Read and write support for nested custom tags (see #1463) * Fix some minor bugs that could lead to empty stub elements, e.g. like empty MomentTensor when reading and later writing again a QuakeML file with a FocalMechanism but no MomentTensor, potentially resulting in QuakeML files that breach the QuakeML schema (see #1896) - obspy.io.seiscomp: * Read and write support for SC3ML event (see #1638 and #1848) * Fix bug where files with arbitrary publicIDs and files with missing depth, latitude, longitude, or elevation tags could not be read (see #1817) - obspy.io.stationtxt: * Write support for stationtxt format (see #1466) - obspy.io.stationxml: * Read and write support for custom tags (see #1024) * No longer add the (unused) time zone field to StationXML datetimes to follow the example of big data centers. (see #1572) * Level of detail can be specified during inventory write (see #1830) using the level keyword (one of: network, station, channel, response). * Skip empty and incomplete channels during reading (see #1839, #1840). - obspy.io.segy: * Fixing an issue when comparing two still packed SEG-Y trace headers (see #1735). * Iterative reading of large SEG-Y and SU files with `obspy.io.segy.segy.iread_segy` and `obspy.io.segy.segy.iread_su`. (see #1400). * Write correct revision number (see #1737). * Textual headers will now always contain the file revision number and the end header mark if nothing else exists at these positions (see #1738). * The SEG-Y format detection now also checks the format version number (see #1781). * Enable reading SEG-Y files that have day of year 0 in trace header (see #1722). * Write textual file headers also if given as a text string (see #1811, #1813). - obspy.io.css: * Read support for NNSA KB Core format waveform data. (see #1332) - obspy.io.mseed: * New generic get_flags() utility function able to retrieve statistics about all fixed header flags and the timing quality. This makes the get_timing_and_data_quality() function obsolete which is thus deprecated and will be removed with the next release. The get_flags() function is also much faster. (see #1141) * Always hook up the libmseed logging to its Python counterpart to avoid some rare segfaults. (see #1658) * Update to libmseed v2.19.5 (see #1703, #1780, #1939). * Correctly read MiniSEED files with a data offset of 48 bytes (see #1540). * InternalMSEEDReadingError now called InternalMSEEDError and InternalMSEEDReadingWarning now called InternalMSEEDWarning as both can now also be raised in non-reading contexts (see #1658). * Should no-longer segfault with arbitrarily truncated files (see #1728). * Will now raise an exception when attempting to directly read mini-SEED files larger than 2048 MiB (#1746). * `.stats.mseed` attributes are no longer per-file but per-trace where applicable (see #1782). * `get_record_information()` - Don't fail if the word order is invalid. - obspy.io.nlloc: * Set preferred origin of event (see #1570) - obspy.io.nordic: * Add Nordic format (s-file) read/write (see #1517) - obspy.io.win: * see obspy.io.datamark. - obspy.io.xseed: * Added azimuth and dip to the get_coordinates() function. (see #1315) * Fixing some issues with the get_resp() output on Python 3 (see #1748). * Can now also parse RESP files (see #1185). * Can transform responses in the Parser object to ObsPy Inventory objects (see #1185). - obspy.scripts: * obspy-scan command line script now also plots and prints overlaps alongside gaps (see #1366) * obspy-plot now has option to disable min/max plot (see #1583) - obspy.signal: * fixed a bug in calibration.rel_calib_stack (resulting amplitude response had wrong scaling if using non-default "overlap_fraction", see #1821) * fixed a bug in coincidence_trigger() with event templates. when a template with mismatching SEED ID was encountered all following (potentially valid) templates were skipped as well (see #1850) * New obspy.signal.quality_control module to compute quality metrics from MiniSEED files. (see #1141) * New correlate function for calculating the cross-correlation function (new implementation based on Scipy). To calculate the shift of the maximum of the cross correlation use xcorr_max. The old xcorr function is deprecated but currently still exists (see #1585). * New obspy.signal.regression module to compute linear regressions, with or without weights, with or without allowing for an intercept. (see #1716, #1747) * add new plotting capabilities to PPSD (temporal variations per frequency and spectrogram-like plot) and also make underlying processed PSDs available via `PPSD.psd_values` property (see #1327) * Fixed bug in `rotate2zne()` for non-orthogonal configurations (see #1913, #1927). * Fixed build warnings in evalresp, partially backported from evalresp 4.0.6 (see #1939). - obspy.taup: * Add obspy.taup.taup_geo.calc_dist_azi, a function to return the distance, azimuth and backazimuth for a source - receiver pair. (see #1538) * Fixing calculations through very small regional models. (see #1761) * Updated ray path plot method, added travel time plot method, and wrapper functions for both ray path and travel time plotting. (see #1501, #1877)

- Python
Published by krischer over 8 years ago

obspy - 1.0.3

This is the third (and planned to be last) bug fix release in the 1.0.x series.

Full changelog:

1.0.3: (doi: 10.5281/zenodo.165134) - obspy.core: * properly pass through kwargs specified for Trace.plot() down to the low-level plotting routines (e.g. events were not shown properly in dayplot of a trace, see #1566) * properly pass through kwargs from Stream.detrend() to Trace.detrend() (see #1607) * Correctly splitting masked arrays in Trace objects for a couple of corner cases (see #1650, #1653). - obspy.core.event.source: * Fix `farfield` if input `points` is a 2D array. (see #1499, #1553) - obspy.clients.earthworm: * Better end of stream detection. (see #1605) * More efficient unpacking of server response. (see #1680) - obspy.clients.neic: * Better end of stream detection. (see #1563) - obspy.clients.seedlink: * Better end of stream detection. (see #1605) - obspy.clients.seishub: * Fix wrong kwargs `first_pick` and `last_pick` in `Client.event.get_list()`. (see #1661) - obspy.io.mseed: * ObsPy can now also read (Mini)SEED files with noise records. (see #1495) * ObsPy can now read records with a data-offset of zero. (see #1509, #1525) * ObsPy can now read MiniSEED files with micro-second wrap arounds. (see #1531) * ObsPy can now read MiniSEED files with no blockette 1000. (see #1544) * ObsPy now always writes Blockette 100 if sampling rate accuracy is otherwise lost. (see #1550) * obspy.io.mseed.util.set_flags_in_fixed_header() now works with Python 3 and also for files with Blockette 100 (see #1648). - obspy.io.quakeml: * write StationMagnitude.residual even when it is zero (see #1625) * read & write Event.region - obspy.io.sac: * `SACTrace.lpspol` and `lcalda` are `True` and `False` by default, when created via `SACTrace.from_obspy_trace` with a `Trace` that has no SAC inheritance. (see #1507) * Reference time not written to SAC file when made from scratch (see #1575) - obspy.io.sh: * Fix writing of long headers for python3 * Whitespace in header fields is not ignored anymore (see #1552) - obspy.io.stationxml: * Datetime fields are written with microseconds to StationXML if microseconds are present. (see #1511) - obspy.io.zmap: * Use first origin/magnitude when writing to zmap if no origin/magnitude is set as preferred. (see #1569) * Parse origin time seconds as a float to avoid losing accuracy (see #1573) - obspy.signal: * PPSD: fix warning message on Python 3 that gets shown when waveforms and metadata mismatch (see #1506) - obspy.taup: * Allow for more than 10 phases with identical names (can happen for certain custom models, see #1593).

- Python
Published by megies almost 9 years ago

obspy - 1.0.2

This is the second bug fix release in the 1.0.x series.

Full changelog:

1.0.2: (doi: 10.5281/zenodo.49636) - obspy.core: * Added workaround for numpy issue where many FFTs of various lengths fill a cache that never gets cleared, effectively creating a memory leak (see #1424). * Trace.filter and Stream.filter don't work on masked arrays anymore because it produced unpredictable results due to the un-initialized data-chunk. The uninitialized masked gap is now also initialized to np.nan in case of floating point data which and a consistent fill value in case of integer data. (see #1363) - obspy.clients.fdsn: * Fixing issue with location codes potentially resulting in unwanted data to be requested. (see #1422) * Included low-gain seismometers in default channel filters in mass-downloader, also included non-oriented channels by default (see #1373). - obspy.db: * Fixed a bug in obspy-indexer command line script (see #1369, command line script was not working, probably since 0.10.0) - obspy.imaging: * Fixed a bug that leads to pressure/tension color blending when plotting semi-transparent DC beachball patches (i.e. with "alpha" not equal to 1, see #1464) * Fixed a bug when plotting non-DC beachball patches without fill colors (i.e. with "nofill=True", see #1464) * Fix arbitrary units in waveform section plot's offset axis, making it possible to add customizations to the plot afterwards (see #1382, see #1383) - obspy.io.ascii: * Fixed a bug that lead to wrong header information in output files when writing non-integer sampling rate data to SLIST or TSPAIR formats (see #1447) - obspy.io.cmtsolution: * Make sure newer CMTSOLUTION files can also be read (see #1479). - obspy.io.gse2: * Fixed a bug that could lead to network code not present in GSE2 output (see #1448) - obspy.io.mseed: * Fixed a bug in obspy-mseed-recordanalyzer (see #1386) - obspy.io.nlloc: * Use geographic coordinates from the NonLinLoc Hypocenter-Phase file if no custom coordinate converter is provided. (see #1390) * Fix reading NonLinLoc Hypocenter-Phase files with more than one hypocenter in it. (see #1480) * Fix reading NonLinLoc Hypocenter-Phase files with unicode characters in them. (see #1483) - obspy.io.quakeml: * Fixed issue with improperly raised warnings when the same file is read twice. (#1376) * Fix writing empty network/station/channel codes in WaveformStreamID objects to QuakeML. (see #1483) - obspy.io.sac: * Try to set SAC distances (dist, az, baz, gcarc) on read, if "lcalda" is true. If "dist" header is found, distances aren't calculated. * SACTrace class returns header values as native Python types instead of NumPy types. * SACTrace.iqual is no longer accepts enumerated string values, but arbitrary integer values. (see #1472) * SACTrace.read now replaces non-ASCII and null-termination characters in string headers with whitespace unless the "debug_strings=True" flag is used. (see #1432) - obspy.io.stationxml: * Always set the number attribute for poles and zeros. (see #1481) - obspy.signal: * PPSD.plot(): fix plotting of percentiles, mode and mean and setting period limits when using "xaxis_frequency=True" (see #1406, #1416) * Work around a bug in SciPy that results in wrong results for bandpass filter when using Nyquist frequency (or higher) as high corner of the passband (see #1451) - obspy.taup: * Fixing path for Pn. (see #1392)

- Python
Published by krischer over 9 years ago

obspy - 1.0.1

This is the first bug fix release in the 1.0.x series.

Full changelog:

1.0.1: (doi: 10.5281/zenodo.48254) - General: * Some methods might have unnecessarily upcasted float32 arrays to float64. Now methods for which it makes sense and which don't lose accuracy don't upcast float32 arrays. Integers are still upcasted. Trace.resample() will also no longer return the original dtype which might have resulted in a large loss of accuracy but it now always returns float64 arrays. (see #1302) - obspy.core: * Trace.normalize() does no longer divide by zero in case an all-zeros data trace is being used. (see #1343) * Inventory.select() and consorts now behave as expected even with empty child elements. (see #1126, #1348) * Code formatting is no longer checked for clean release versions. Thus updates to the linters no longer break the tests for releases. (see #1312) * remove_response(..., pre_file=None, plot=True) works again. (see #1320) - obspy.clients.arclink: * Restored ArcLink encryption support. (see #1352, #1347) - obspy.clients.fdsn: * Local URLs are now recognized as valid URLs. (see #1309) * Some bug fixes for the mass downloader. (see #1293, #1304) * The NOA node has been added to the list of known nodes. (see 2347a25714bc3e16068031f4b6138fafd627d34e) - obspy.io.sac: * More automatic merging of SAC and ObsPy headers. The new `obspy.io.sac` modules thus behaves more like the old one and more in line with expectations of users. (see #1285) * No more out of bounds errors when assigning coordinates. (see #1300) * The evdp header can be set again. (see #1345) * Correctly propagating sampling rate changes to the SAC headers. (see #1317) * Always set nvhdr, leven, lovrok, iftype to ensure valid SAC files. (see #1204) - obspy.io.xseed: * The Parser.get_paz() method now works with multiple blockette 53s. (see #1281) - obspy.taup * Fixed wrong azimuth direction for paths > 180 degrees distance (see #1289) * Azimuth is appended to arrivals as well (see #1289) * Fixed issue with taup cache function on Python 2.7. (see #1308)

- Python
Published by megies almost 10 years ago

obspy - 1.0.0

This is a big release with significant internal changes, new features, stability improvements, and much more to prepare ObsPy for future challenges and get rid of accumulated technical debt. It is now stable enough to officially declare it version 1.0. Changes are broad and numerous - follow this link to learn more: - What's New in ObsPy 1.0

Full Changelog

`` 1.0.0: - General: * Requirements have been increased to reflect latest distributions: * Removed support for Python 2.6. * Added support for Python 3.5. * matplotlib >= 1.1.0 is now required. * numpy >= 1.6.1 is now required * scipy >= 0.9.0 is now required * Reorganized the submodule structure. We provide a deprecation path so the old imports will continue to work for one ObsPy version. * Consistent naming scheme across the code base. This results in some functions having different names. Most things that worked with ObsPy 0.10 will continue to work with this version, but starting with the next version they will fail. Pay attention to the deprecation warnings. * Support for additional waveform data formats: - Read support for the ASCII format for waveforms from the K-NET and KiK-net strong-motion seismograph networks. * Support for additional event data formats: - CMTSOLUTION files used by many waveform solvers. - ESRI shapefile write support, useful in GIS applications (see #1066) - Google Earth KML output. * Support for additional station data format: - The FDSN web service station text format can now be read. - Read support for the NIED's moment tensor TEXT format (see #1125) - Google Earth KML output. - Read support for SeisComP3 inventory files. - obspy.core: * New method for generating sliding windows from Stream/Trace windows. (see #860) * Stream/Trace.slice() now has the optionalnearestsample` argument from Stream/Trace.trim(). * Trace.removeresponse() now has plot option to show/output a plot of all individual steps of instrument response removal in frequency domain (see #1116). * New method Stream/Trace.removesensitivity() to remove instrument sensitivity * Fix incorrect parsing of some non-ISO8601 date/time strings. (see #1215) * Added plotting method to Event (customizable subplots from a selection of map, beachball and farfield radiation plots, see #1192) - obspy.clients.fdsn: * Replace FDSN webservice shortcut NERIES with EMSC and deprecate the NERIES shortcut, will be removed in a future release (see #1146). * Now requests gzipped data for the XML files. Much smaller files! * The station service can now also be used to download files in the text format. This has limited information but is much faster. * New mass downloader to assist in downloading data across a large number of FDSN web services. * Catch invalid URLs when initialising Client and avoid confusing error messages (see #1162) - obspy.clients.filesystem.sds: * New client to read data from local SDS directory structure (see #1135). * Command line script obspy-sds-report to generate html page with information on latency, data availability percentage and number of gaps for a local SDS archive (see #1202) - obspy.clients.neries: * Removed the dedicated client. Data can still be accessed by using the FDSN client. - obspy.clients.syngine: * New client for the IRIS Syngine service to retrieve custom synthetic seismograms. - obspy.imaging: * Experimental support for Cartopy when plotting maps. Use the method argument to functions that plot maps to select between Basemap or Cartopy. * New default colormap for all plots. A backport of the new viridis colormap from matplotlib is available for those using older matplotlib releases. * Added plotting routines for farfield radiation patterns of moment tensors - obspy.io.kml: * New module for Google KML output of Inventory and Catalog objects (e.g. for use in Google Earth) - obspy.io.mseed: * Upgrade to libmseed 2.16 - obspy.io.seiscomp.sc3ml: * New module reading SeisComP3 inventory files to ObsPy inventory objects (see #1182). - obspy.io.shapefile: * New module for ESRI shapefile write support (see #1066) - obspy.io.stationtxt: * New module reading the FDSN station files. - obspy.signal: * Switch to second-order sections for filters; backported from SciPy 0.16.0 (see #1028) * New Lanczos interpolation/resampling (see #1101) * Higher order detrending methods (see #1173) * PPSD (see #931, #1108, #1130, #1187): - Algorithm for PSD computation was improved, especially affecting results at long periods (for detailed discussion see #931 and #1108). - Keywords paz and parser were removed in favor of new keyword metadata. PPSD now accepts metadata in a much wider range of formats: * Inventory objects (e.g. from StationXML or from FDSN webservice) * obspy.io.xseed Parser objects (e.g. from dataless SEED file) * filename of a RESP file * dictionary with poles and zeros information (like in prior versions) Most old codes should still work, issuing a deprecation warning, but old code that specifies both paz and parser keywords will raise an exception. - Whenever possible (i.e. when using for metadata an Inventory, a Parser or a RESP file), response calculation now takes into account the full response (all stages) as opposed to only using the poles and zeros response stage (as was done in previous versions when using a Parser object). When using a poles and zeros dictionary response calculation is unchanged (as no information on other stages is available, of course). - PPSD now stores the psd for each time segment that gets processed, instead of only storing the stacked histogram. That way, differing custom stacks with various selection criteria (e.g. time of day, by weekday, etc.) can now be made from the same processed data (see #1130). - New save/load mechanism using numpy .npz binary format that circumvents some problems with the old pickle mechanism: `PPSD.savenpz()andPPSD.loadnpz()(andPPSD.addnpz()to add data from additional npz files) - Change default colormap to new obspy default sequential colormap (matplotlibs new viridis colormap). The old PQLX colormap is provided by obspy.imaging.cm.pqlxand can be used with PPSD.plot(..., cmap=...). - new optionPPSD.plot(..., cumulative=True)for a cumulative plot of the histogram, i.e. a non-exceedence percentage visualization, similar to thepercentileoption. - x axis inPPSD.plot()can be switched to frequency in Hz with PPSD.plot(..., xaxisfrequency=True)(see #1130) - changes to special handling of rotational: now handled by kwarg specialhandling="ringlaser"(kwargisrotationaldatais deprecated, see #916) - special handling option for hydrophone data (no differentiation, see #916) - bin width on frequency axis can now be controlled using PPSD(..., frequencybinwidthoctaves=...)(in fractions of octaves, default is the old fixed setting of 1/8 octaves as in PQLX) - obspy.taup * Added support for nd file format for input velocity models. Allows for named discontinuities at arbitrary depths allowing for less Earth like models (see #1147). * Added three methods (gettraveltimesgeo(),getpiercepointsgeo() andgetraypathsgeo()) toTauPyModelto handle station and event location data as latitude and longitude, instead of the source to station distance in degrees. In additiongetraypathsgeo()and getpiercepointsgeo()decorate the returned pierce points and ray paths with the latitude and longitude of each point. Some functionality needs thegeographiclibmodule to be installed. (See #1164.) * ObsPy now ships with a bunch of new velocity models in addition to the existing ones:prem,sp6,1066a,b,herrin` (See #1196). * Add support for buried receivers (see #1103.) * Port more accurate calculation of ray parameter from Java. The effect is stronger for longer phases, but also corrects issues with shorter body and surface waves (see #986.) * Fix incorrect branch splitting which also caused issues for extremely shallow phases (see #1057.) * Proper cache for model splits resulting in much faster calculations if the source depth is repeatedly the same (see #1248).

0.10.3: - obspy.core: * Fix reading of multiple catalog files using globs (see #1065). * Fixed a bug when using Trace.remove_response(..., water_level=None). With that setting that is supposed to not use any water level stabilization in the inversion of the instrument response spectrum actually the instrument response was never inverted and thus instead of a deconvolution a convolution was performed (see #1104). * Fixing floating point precision/rounding issue with UTCDateTime when initializing with floating point seconds, i.e. with microseconds, that could lead to microseconds being off by 1 microsecond (see #1096) * Correct gap/overlap time returned by Stream.getgaps() and printed by Stream.printgaps() which was incorrect by one time the sampling interval (see #1151) * Stream.getgaps(): return overlaps specified in units of samples as negative integers (see #1151) - obspy.fdsn: * More detailed error messages on failing requests (see #1079) * Follows redirects for POST requests (see #1143) - obspy.imaging: * fix some bugs in obspy-scan (see #1138) - obspy.mseed: * Blockette 100 is now only written for Traces that need it. Previously it was written or not for all Traces, depending on whether the last Trace needed it or not. (see #1069) * Fixed a bug that prevented microsecond accuracy for times before 1970 (see #1102). * Updated to libmseed 2.17. - obspy.signal: * Bug fixed within rotate.rotate2zne(). Additionally it can now also perform the inverse rotation (see #1061). * Bug fixed in triggering. When using option `maxlendeleteand a trigger occurred right before the end of data, one trigger was potentially lost (see #1145 for details). - obspy.station: * Plotting responses across multiple channels is more robust now in presence of some strange channels (e.g. with zero sampling rate, happens e.g. for state of health channels, see #1115) * ObsPy no longer assumes that the StationXML namespace is the default namespace (see #1060). * Checking if a file is a StationXML file is less rigorous (and much faster) now (not checking strict validity against xsd schema but only looking for a FDSNStationXML root element, see #1114). This means thatreadinventory()without explicitly specified format will correctly detect more files as StationXML that have very slight breaches of the schema but still can be interpreted as StationXML. * fix savingxcorrPickCorrection()results to an image file (see #1154) - obspy.taup: * Calculating arrival times for surface waves now works (see #1055) * Calculating arrivals for underside reflections now works (see #1089) - obspy.y: * correct misspelled name of a Y specific header field (see #1127) - obspy.zmap * Add support for time values with sub-second precision (see #1093) ``

- Python
Published by krischer about 10 years ago

obspy - 0.10.2

This is a maintenance release containing several bug fixes: - obspy.core: - Fix catalog plot with events that have no origin depth or origin time (see #1021) - obspy.datamark: - Fix datawide=3 and datawide=0.5 block reading (see #1016) - obspy.earthworm: - Fix Python3 compatibility problem - obspy.imaging: - Fix flipped maps due to bug in Basemap - Fix handling of velocity reduction in section plots with degree offsets (see #1029) - Allow section plots over existing figures by not modifying existing lines - Don't prematurely close waveform figure if returning its handle - obspy.seedlink: - Fix Python3 compatibility for seedlink.easyseedlink - Basic seedlink client: Properly timeout requests with valid station selection but no data available in selected time window (see #1045) - obspy.signal: - Fix return data types/values of polarization routines (see #1026) - obspy.station: - Fix URL to FDSN StationXML schema in StationXML output (see #1023)

- Python
Published by megies over 10 years ago

obspy - 0.10.1

After over 2200 commits from 25 contributors ObsPy 0.10.1 is finished and has been released.

The key new features are support for Python 3, a slew of new file formats, and a new TauP implementation.

What's New in ObsPy 0.10.1

ObsPy 0.10.1 fixes some installation issues with ObsPy 0.10.0 thus ObsPy 0.10.0 is not a recommended release.

Full changelog: - Highlights: - Python3 support - anaconda support - New formats: AH, CNV, Kinemetrics EVT, NDK, NLLOC, PDAS, ZMAP - ObsPy licensed under LGPL v3.0 now as a whole. - General: - Support for Python 3.3 and 3.4 in addition to 2.6 and 2.7 - ObsPy licensed under LGPL v3.0 now as a whole. - More generic processing history for most Stream and Trace methods. - Now requires NumPy >= 1.4.0 - Now requires SciPy >= 0.7.2 - Tested compatibility with most major Linux distributions still receiving updates. - The next major obspy release (0.11) will drop support for: - Python < 2.7 - matplotlib < 1.1 - numpy < 1.6 - scipy < 0.10 - obspy.ah - New submodule for reading the AH (Ad Hoc) waveform format - obspy.arclink: - add support for Poles and Zeros type "B" (Analog, Hz), see #899 - obspy.core: - Preview waveform plot improved: interactive updating of ticks and ticklabels, correct ticklabels for sub-minute zoom level (#657) - fixed a problem with UTCDateTime with timestamps of far future dates (larger than 2038, often seen in StationXML end dates, see #805) - Support for basic custom namespace tags in QuakeML I/O (see #454) - interpolate() method for Stream/Trace objects. - Dictionary values added to an AttribDict will now be converted to an AttribDict. - Removed custom OrderedDict backport for Python 2.6. Now relies on the one provided by the future package. - Renamed 'type' argument to 'method' in the Trace.differentiate() method. - Renamed 'type' argument to 'method' in the Trace.integrate() method. Additionally, several broken alternate methods have been removed. - new plugins for NonLinLoc formats for readEvents() and Catalog/Event.write() (see obspy.nlloc and #900) - The wraplongstring utility function is deprecated. Users may use the textwrap module which provides similar functionality. - new plugin for CNV event format (used by VELEST) for Catalog/Event.write() (see obspy.cnv and #905) - better customizable control during merging traces with sub-sample shift of sampling points (see #980) - obspy.cnv: - new plugin to write CNV event files (used by VELEST) from Catalog/Event objects. (see #905) - obspy.css: - Support for little-endian binary and ASCII files (see #881). - Support exporting Inventory objects to CSS relations. - obspy.fdsn: - WADL files are cached per Python process. - Bulk station downloading using POST requests. - Support for FDSNWS 1.1, e.g. the matchtimeseries parameter for the station service. - obspy.imaging: - Maintain beach ball aspect ratio through optional axes argument (see #734) - Refactored Catalog.plot() into helper routine obspy.imaging.maps.plotbasemap() (see #753). - The projections of Catalog.plot() have been modified slightly to provide equal-area projections: - The "cyl" projection is now named "global". It is now the Mollweide projection. - The '"local"projection now uses the Albers Equal Area projection. - obspy.kinemetrics - New submodule for reading the Kinemetrics EVT waveform format - obspy.mseed: - Support for reading and writing all encodings supported by libmseed. - proper error reporting while reading -details=Truewhen reading will now write to Trace.stats.mseed.blkt1001.timingqualityinstead of Trace.stats.mseed.timingquality. - The timing quality will now also be written to a file if it is set. - Non-existing values when reading withdetails=Truewill now be set to Falseinstead of-1. - New utility functionobspy.mseed.util.setflagsinfixedheader() giving the ability to overwrite flags in the fixed header of existing MiniSEED files. - The sequence number of the first record of each Trace can now be specified when writing MiniSEED files. -obspy-mseed-recordanalyzer: - Bugfix: when specifying an out-of-bounds record number, information about the last record in the file was displayed (see #957). Now a proper error message is shown and the command line script exits with non-zero exit code. - Faster reading of a single record header - Added option "-a" to print information of all records - upgrade to libmseed 2.15 - obspy.ndk: - New submodule able to read NDK files from the Global CMT project. - obspy.neries: - The whole module is deprecated and will be removed with the next major release. To access EMSC event data please use the obspy.fdsn client (useClient(baseurl='NERIES', ...)), for access to ORFEUS waveform data please use the obspy.fdsn client (use Client(baseurl='ORFEUS', ...)) and for travel times please use obspy.taup. - obspy.nlloc: - new plugins to write NonLinLoc Phase observations files from Catalog/Event objects and to read NonLinLoc Hypocenter-Phase file into Catalog/Event objects. (see #900) - obspy.pdas: - read support for PDAS waveform files - obspy.sac: - Newbyteorderoption for writing sac files to disk. - Can now read/write from/to file-like objects like io.BytesIO and open files. - obspy.seedlink: - bugfix: INFO responses from the IRIS ringserver are now parsed correctly (see #807) - New submoduleeasyseedlinkproviding an easier way to create SeedLink clients - NewClientclass providing a basic seedlink client for individual requests of finite time windows (i.e. non-continuous programs) - Fix memory leak inSLClient(MiniSEED record leak in packet parser, see #918) - obspy.seisan: - bugfix the actual data were misaligned by one - obspy.seishub: - use specified timeout in all requests to server (see #786) - Helper methodClient.event.getEvents()to fetch aCatalogobject from a seishub server of version 1.4.0 or higher. - obspy.signal: - Increased performance of PPSD plotting. - Interpolating methods. Wrappers around routines from scipy and a custom weighted average slopes` method from Wiggins 1976. - PPSD has new methods to extract mean and mode of the histogram by frequency (see #804) - PPSD: water level in instrument correction can now be specified by user on PPSD initialization - New polarization analysis methods: flinn, vidale, pm - obspy.station: - add plotting methods (response/bode, location maps) to Inventory/Station/Channel/Response objects (see #750) - add getcoordinates method to inventory and network objects (see #740) - read/write support for DataAvailability tags in StationXML files. - write support for SACPZ ASCII representation of channel responses. - obspy.taup: - Replaced Fortran implementation with much more powerful Python port of Java TauP. This enabled us to drop all Fortran code, which simplifies releases and builds tremendously. - obspy.xseed: - add support for Poles and Zeros type "B" (Analog, Hz), see #899 - obspy.zmap: - New module which adds ZMAP read/write support - scripts: - All scripts now require argparse instead of optparse. - All scripts now accept -V or --version to print version information. - obspy-dataless2xseed: -v and --version options are renamed to -x and --xml-version to not conflict with above option. - obspy-indexer: Options have been modified or amended slightly: - --data is a new alias to -d. - --db-uri is a new alias to -u. - --log is a new alias to -l. - --poll-interval is a new alias to -i. - --recent is a new alias to -r. - -a is a new alias to --all-files. - -f is a new alias to --force-reindex. - -H is a new alias to --host. - -p is a new alias to --port. - --checkduplicates is renamed to --check-duplicates. - --dropdatabase is renamed to --drop-database. - --mappingfile is renamed to --mapping-file. - --runonce is renamed to --run-once. - obspy-mopad: Options have been modified or amended slightly: - convert subcommand: - No changes. - decompose subcommand: - --inputsystem is renamed to --input-system. - --outputsystem is renamed to --output-system. - gmt subcommand: - --show1fp is renamed to --show-1fp. - --showisotropicpart is renamed to --show-isotropic-part. - plot subcommand: - --basisvectors is renamed to --basis-vectors. - --fullsphere is renamed to --full-sphere. - --inputsystem is renamed to --input-system. - --linesonly is renamed to --lines-only. - --outputfile is renamed to --output-file. - --pasystem is renamed to --pa-system. - --pressurecolour is renamed to --pressure-colour. - --show1fp is renamed to --show-1fp. - --showisotropicpart is renamed to --show-isotropic-part. - --tension_colour is renamed to --tension-colour. - obspy-plot: --format option is accepted as an alias of -f. - obspy-print: Options have been modified or amended slightly: - --format is a new alias of -f. - --nomerge is renamed to --no-merge. - obspy-runtests: -a option is accepted as an alias of --all. - obspy-scan: Options have been modified or amended slightly: - --endtime is renamed to --end-time. - --event-times is renamed to --event-time. --event-time may be specified multiple times. - --ids is renamed to --id. --id may be specified multiple times. - --nox is renamed to --no-x. - --nogaps is renamed to --no-gaps. - --starttime is renamed to --start-time.

- Python
Published by krischer almost 11 years ago

obspy - 0.10.0

After over 2200 commits from 25 contributors ObsPy 0.10.0 is finished and has been released.

The key new features are support for Python 3, a slew of new file formats, and a new TauP implementation.

Migration Guide from older ObsPy Versions

Full changelog: - Highlights: - Python3 support - anaconda support - New formats: AH, CNV, Kinemetrics EVT, NDK, NLLOC, PDAS, ZMAP - ObsPy licensed under LGPL v3.0 now as a whole. - General: - Support for Python 3.3 and 3.4 in addition to 2.6 and 2.7 - ObsPy licensed under LGPL v3.0 now as a whole. - More generic processing history for most Stream and Trace methods. - Now requires NumPy >= 1.4.0 - Now requires SciPy >= 0.7.2 - Tested compatibility with most major Linux distributions still receiving updates. - The next major obspy release (0.11) will drop support for: - Python < 2.7 - matplotlib < 1.1 - numpy < 1.6 - scipy < 0.10 - obspy.ah - New submodule for reading the AH (Ad Hoc) waveform format - obspy.arclink: - add support for Poles and Zeros type "B" (Analog, Hz), see #899 - obspy.core: - Preview waveform plot improved: interactive updating of ticks and ticklabels, correct ticklabels for sub-minute zoom level (#657) - fixed a problem with UTCDateTime with timestamps of far future dates (larger than 2038, often seen in StationXML end dates, see #805) - Support for basic custom namespace tags in QuakeML I/O (see #454) - interpolate() method for Stream/Trace objects. - Dictionary values added to an AttribDict will now be converted to an AttribDict. - Removed custom OrderedDict backport for Python 2.6. Now relies on the one provided by the future package. - Renamed 'type' argument to 'method' in the Trace.differentiate() method. - Renamed 'type' argument to 'method' in the Trace.integrate() method. Additionally, several broken alternate methods have been removed. - new plugins for NonLinLoc formats for readEvents() and Catalog/Event.write() (see obspy.nlloc and #900) - The wraplongstring utility function is deprecated. Users may use the textwrap module which provides similar functionality. - new plugin for CNV event format (used by VELEST) for Catalog/Event.write() (see obspy.cnv and #905) - better customizable control during merging traces with sub-sample shift of sampling points (see #980) - obspy.cnv: - new plugin to write CNV event files (used by VELEST) from Catalog/Event objects. (see #905) - obspy.css: - Support for little-endian binary and ASCII files (see #881). - Support exporting Inventory objects to CSS relations. - obspy.fdsn: - WADL files are cached per Python process. - Bulk station downloading using POST requests. - Support for FDSNWS 1.1, e.g. the matchtimeseries parameter for the station service. - obspy.imaging: - Maintain beach ball aspect ratio through optional axes argument (see #734) - Refactored Catalog.plot() into helper routine obspy.imaging.maps.plotbasemap() (see #753). - The projections of Catalog.plot() have been modified slightly to provide equal-area projections: - The "cyl" projection is now named "global". It is now the Mollweide projection. - The '"local"projection now uses the Albers Equal Area projection. - obspy.kinemetrics - New submodule for reading the Kinemetrics EVT waveform format - obspy.mseed: - Support for reading and writing all encodings supported by libmseed. - proper error reporting while reading -details=Truewhen reading will now write to Trace.stats.mseed.blkt1001.timingqualityinstead of Trace.stats.mseed.timingquality. - The timing quality will now also be written to a file if it is set. - Non-existing values when reading withdetails=Truewill now be set to Falseinstead of-1. - New utility functionobspy.mseed.util.setflagsinfixedheader() giving the ability to overwrite flags in the fixed header of existing MiniSEED files. - The sequence number of the first record of each Trace can now be specified when writing MiniSEED files. -obspy-mseed-recordanalyzer: - Bugfix: when specifying an out-of-bounds record number, information about the last record in the file was displayed (see #957). Now a proper error message is shown and the command line script exits with non-zero exit code. - Faster reading of a single record header - Added option "-a" to print information of all records - upgrade to libmseed 2.15 - obspy.ndk: - New submodule able to read NDK files from the Global CMT project. - obspy.neries: - The whole module is deprecated and will be removed with the next major release. To access EMSC event data please use the obspy.fdsn client (useClient(baseurl='NERIES', ...)), for access to ORFEUS waveform data please use the obspy.fdsn client (use Client(baseurl='ORFEUS', ...)) and for travel times please use obspy.taup. - obspy.nlloc: - new plugins to write NonLinLoc Phase observations files from Catalog/Event objects and to read NonLinLoc Hypocenter-Phase file into Catalog/Event objects. (see #900) - obspy.pdas: - read support for PDAS waveform files - obspy.sac: - Newbyteorderoption for writing sac files to disk. - Can now read/write from/to file-like objects like io.BytesIO and open files. - obspy.seedlink: - bugfix: INFO responses from the IRIS ringserver are now parsed correctly (see #807) - New submoduleeasyseedlinkproviding an easier way to create SeedLink clients - NewClientclass providing a basic seedlink client for individual requests of finite time windows (i.e. non-continuous programs) - Fix memory leak inSLClient(MiniSEED record leak in packet parser, see #918) - obspy.seisan: - bugfix the actual data were misaligned by one - obspy.seishub: - use specified timeout in all requests to server (see #786) - Helper methodClient.event.getEvents()to fetch aCatalogobject from a seishub server of version 1.4.0 or higher. - obspy.signal: - Increased performance of PPSD plotting. - Interpolating methods. Wrappers around routines from scipy and a custom weighted average slopes` method from Wiggins 1976. - PPSD has new methods to extract mean and mode of the histogram by frequency (see #804) - PPSD: water level in instrument correction can now be specified by user on PPSD initialization - New polarization analysis methods: flinn, vidale, pm - obspy.station: - add plotting methods (response/bode, location maps) to Inventory/Station/Channel/Response objects (see #750) - add getcoordinates method to inventory and network objects (see #740) - read/write support for DataAvailability tags in StationXML files. - write support for SACPZ ASCII representation of channel responses. - obspy.taup: - Replaced Fortran implementation with much more powerful Python port of Java TauP. This enabled us to drop all Fortran code, which simplifies releases and builds tremendously. - obspy.xseed: - add support for Poles and Zeros type "B" (Analog, Hz), see #899 - obspy.zmap: - New module which adds ZMAP read/write support - scripts: - All scripts now require argparse instead of optparse. - All scripts now accept -V or --version to print version information. - obspy-dataless2xseed: -v and --version options are renamed to -x and --xml-version to not conflict with above option. - obspy-indexer: Options have been modified or amended slightly: - --data is a new alias to -d. - --db-uri is a new alias to -u. - --log is a new alias to -l. - --poll-interval is a new alias to -i. - --recent is a new alias to -r. - -a is a new alias to --all-files. - -f is a new alias to --force-reindex. - -H is a new alias to --host. - -p is a new alias to --port. - --checkduplicates is renamed to --check-duplicates. - --dropdatabase is renamed to --drop-database. - --mappingfile is renamed to --mapping-file. - --runonce is renamed to --run-once. - obspy-mopad: Options have been modified or amended slightly: - convert subcommand: - No changes. - decompose subcommand: - --inputsystem is renamed to --input-system. - --outputsystem is renamed to --output-system. - gmt subcommand: - --show1fp is renamed to --show-1fp. - --showisotropicpart is renamed to --show-isotropic-part. - plot subcommand: - --basisvectors is renamed to --basis-vectors. - --fullsphere is renamed to --full-sphere. - --inputsystem is renamed to --input-system. - --linesonly is renamed to --lines-only. - --outputfile is renamed to --output-file. - --pasystem is renamed to --pa-system. - --pressurecolour is renamed to --pressure-colour. - --show1fp is renamed to --show-1fp. - --showisotropicpart is renamed to --show-isotropic-part. - --tension_colour is renamed to --tension-colour. - obspy-plot: --format option is accepted as an alias of -f. - obspy-print: Options have been modified or amended slightly: - --format is a new alias of -f. - --nomerge is renamed to --no-merge. - obspy-runtests: -a option is accepted as an alias of --all. - obspy-scan: Options have been modified or amended slightly: - --endtime is renamed to --end-time. - --event-times is renamed to --event-time. --event-time may be specified multiple times. - --ids is renamed to --id. --id may be specified multiple times. - --nox is renamed to --no-x. - --nogaps is renamed to --no-gaps. - --starttime is renamed to --start-time.

- Python
Published by QuLogic almost 11 years ago

obspy - 0.9.2

This is a maintenance release and contains the collective bug fixes and minor feature improvements of around 150 commits so we advise all users to upgrade.

Changelog: - general: - fix installation on CygWin (see #755) - obspy.core: - bugfix: Input/Output to/from QuakeML was missing Amplitude elements (see #763) - fixing very slow response removal for some magic bad values of npts (see #715) - extend removeresponse for polynomial responses (thanks to Sebastien/bonaime, see #566) - obspy.datamark: - bugfix: channel code now correctly read (4 hex char) - bugfix: channels can have different sampling rate - improvement: datawide 0.5 (4 bits) encoding now supported - century of data can now be specified - obspy.fdsn: - time out errors get raised properly now. timeout can be specified at Client initialization now. (see #717) - for advanced users: endpoints of any particular service can now be specified explicitly (see #754) - new known FDSN providers: 'ORFEUS', 'GFZ', 'NERIES' - more robust WADL parser - the `attachresponse=True` argument now uses a faster approach to download the station data - obspy.imaging: - Fixing waveform plotting. - obspy.sac: - SAC files with two digit year header field are now interpreted as "19xx", same as done by SAC (see #779) - obspy.seedlink: - bugfix: different instances of a SeedLink connection had a shared state (see #561) - multiple smaller bugfixes (see #777) - trailing null characters are now stripped from INFO responses (see #778) - obspy.seg2: - numbers are now also recognized as months - now filters non-printable chars from the header enabling it to read some more files - obspy.signal: - the TF misfits now correctly use logarithmic axes instead of scaling an image - obspy.station: - some bugfixes in the obspy.station object classes (see #710) - more robust writing of StationXML in case of missing elements - obspy.taup: - bugfix: avoid a bug that caused multiple calls to taup to result in spurious unexpected results (see #728)

- Python
Published by krischer almost 12 years ago

obspy - 0.9.0

This release contains 1423 commits from 20 contributors. Thanks a bunch to everyone!

The new key features are full support for the FDSN web services (waveform, event, and station data) and the FDSN StationXML format including the calculation of instrument responses directly from StationXML files. Other notable changes are the support for the Nanometrics Y file format, the CSS (Center for Seismic Studies) waveform data format, the NEIC PDE bulletin event catalog files, a new client to access data from the NEIC CWB QueryServer, and numerous smaller enhancements and bug fixes.

Migration Guide from older ObsPy Versions

Full Changelog: - general: - Added mock testing library. - obspy.arclink: - user keyword is now required during client initialization - obspy.core: - Stream/Trace.attachresponse(): convenience method to attach response to traces from inventories. - new method Stream/Trace.removeresponse() to remove instrument response from Response object attached to trace(s), e.g. after parsing a StationXML file. Similar to Stream/Trace.simulate(seedresp=...) for using a Parser object (from dataless or xseed) or RESP file, but less cluttered parameters and without the simulating a different instrument part. - Updated event classes to QuakeML 1.2 final. - Moved obspy.core.event.validate() to obspy.core.quakeml.validate() - The writeQuakeML() function, also accessible through Catalog.write(..., format="quakeml"), now has an optional keyword argument 'validate'. If True, the resulting QuakeML file will be validated against the QuakeML schema before being written. An AssertionError will be raised in case the validation fails. - validation of QuakeML against official schema working now - renamed obspy.core.util.types into obspy.core.util.obspytypes (#595) - new parameter replace for Enums which allows definition of replaceable keywords (fixes #531) - Trace.split() will return a stream object containing traces with unmasked arrays - trim(pad=True, fillvalue=xxx) will return a NumPy ndarray as stated in the API documentation (#540) - read() supports now tar und zip archives and variants (tar.gz, tar.bz2) - new options for Stream/Trace.taper() to control the length of the tapering for all windowing functions and perform one-sided tapering - Many Stream and Trace methods are now chainable, e.g. st.taper().plot() - when using Stream/Trace.simulate(seedresp={...})) parameter "date" can now be omitted, start time of each trace is used for response lookup then - when using Stream/Trace.simulate(seedresp={...})) for parameter "filename" instead of the path to a local file now also can be provided either a file-like object with RESP information or an obspy.xseed.Parser object (e.g. created reading a dataless SEED file). - fix Stream.select() when using values like "" or 0, e.g. Stream.select(location="") or when filtering by component with a channel code less than 3 characters long (now these traces will be omitted from the result when filtering by component). - fix a bug when merging valid data into a masked trace (see #638) - event.ResourceIdentifier objects are now initialized with a QuakeML conform string by default, i.e. if no custom prefix is provided during initialization. - event.ResourceIdentifier.resourceid attribute was renamed to event.ResourceIdentifier.id - event.ResourceIdentifier now was has a method regenerateuuid() that allows the random hash part to be regenerated for resource identifiers with no fixed id string (can be useful to generate a new hash if the referred object changes). - added a new test that asserts that the whole codebase is valid according to the flake8 tool. - inverse filtering of catalogs. - bugfix: Trace.simulate() now passes the SEED network, station, location, and channel identifiers to evalresp. - added command line script "obspy-print" to print information on local waveform files - check if ndim == 1 when setting Trace.data and raise if necessary, see #695 - change waveformid parameter in obspy.core.event.FocalMechanism to list of WaveformStreamID as specified in QuakeML docs (#633) - obspy.css: - new module for CSS (Center for Seismic Studies) format - currently read support for waveform data - obspy.db: - obspy-indexer script uses from now on hash symbols (#) instead of pipe (|) for features because pipe has a special meaning on most operating systems - obspy.fdsn: - new client module to access servers based on the FDSN web service definition (http://www.fdsn.org/webservices/) - obspy.gse2: - read/write STA2 header line which is officialy mandatory but in pratice often not used - obspy.imaging: - more options to customize day plots - dayplot now plots matching picks (station, network, location) if a list of event objects is provided using the events kwarg. - obspy-scan: new option --print-gaps - added plotting of record sections - automatic merging can be disabled for obspy-plot - obspy.pde: - new module for reading NEIC PDE bulletin files into an obspy catalog object. Only the "mchedr" format (file format revision of February 24, 2004) is supported. - obspy.realtime: - two new processing plugins (offset, kurtosis) - obspy.seg2: - adding read support for SEG2 data format code 1 and 2 (signed 16bit/32bit integer) - obspy.segy: - fix a bug in plotting (see #689) - obspy.signal: - adding cross correlation single-station similarity checking with master event templates to coincidence trigger - add PPSD support for segments of arbitrary length - default bin width of PPSD is changed to 1dB. This is the value used by McNamara and Buland 2004. - fix a bug when using evalresp with RESP files with very short epochs. see #631. - for seisSim(seedresp={...})) for parameter "filename" instead of the path to a local file now also can be provided either a file-like object with RESP information or an obspy.xseed.Parser object (e.g. created reading a dataless SEED file). - seisSim(seedresp={...}): the seedresp dictionary now requires network, station, location, and channel keys. - removed deprecated psd module - use spectralestimation module instead - removed deprecated sonic function - use arrayprocessing function instead - corrected function signature of csactaper - obspy.station: - adding support for FDSN StationXML - obspy.mseed: - new kwarg arguments for reading mseed files: headerbyteorder and verbose - libmseed v2.12 - obspy.neic: - new module to access data from CWB QueryServer run at the National Earthquake Information Center (NEIC) in Golden, CO USA. - obspy.y: - adding read support for Nanometrics Y file format - scripts: - obspy-plot: new option "-o" to output plot to file instead of opening a window

- Python
Published by krischer about 12 years ago

obspy - 0.9.0rc1

• general:
  • Added mock testing library.
• obspy.arclink:
  • user keyword is now required during client initialization
• obspy.core:
  • Updated event classes to QuakeML 1.2 final.
  • Moved obspy.core.event.validate() to obspy.core.quakeml.validate()
  • The writeQuakeML() function, also accessible through Catalog.write(..., format="quakeml"), now has an optional keyword argument 'validate'. If True, the resulting QuakeML file will be validated against the QuakeML schema before being written. An AssertionError will be raised in case the validation fails.
  • validation of QuakeML against official schema working now
  • renamed obspy.core.util.types into obspy.core.util.obspy_types (#595)
  • new parameter replace for Enums which allows definition of replaceable keywords (fixes #531)
  • Trace.split() will return a stream object containing traces with unmasked arrays
  • trim(pad=True, fill_value=xxx) will return a NumPy ndarray as stated in the API documentation (#540)
  • read() supports now tar und zip archives and variants (tar.gz, tar.bz2)
  • new options for Stream/Trace.taper() to control the length of the tapering for all windowing functions and perform one-sided tapering
  • Many Stream and Trace methods are now chainable, e.g. st.taper().plot()
  • when using Stream/Trace.simulate(seedresp={...})) parameter "date" can now be omitted, start time of each trace is used for response lookup then
  • when using Stream/Trace.simulate(seedresp={...})) for parameter "filename" instead of the path to a local file now also can be provided either a file-like object with RESP information or an obspy.xseed.Parser object (e.g. created reading a dataless SEED file).
  • fix Stream.select() when using values like "" or 0, e.g. Stream.select(location="") or when filtering by component with a channel code less than 3 characters long (now these traces will be omitted from the result when filtering by component).
  • fix a bug when merging valid data into a masked trace (see #638)
  • event.ResourceIdentifier objects are now initialized with a QuakeML conform string by default, i.e. if no custom prefix is provided during initialization.
  • event.ResourceIdentifier.resource_id attribute was renamed to event.ResourceIdentifier.id
  • event.ResourceIdentifier now was has a method regenerate_uuid() that allows the random hash part to be regenerated for resource identifiers with no fixed id string (can be useful to generate a new hash if the referred object changes).
  • added a new test that asserts that the whole codebase is valid according to the flake8 tool.
  • inverse filtering of catalogs.
  • bugfix: Trace.simulate() now passes the SEED network, station, location, and channel identifiers to evalresp.
  • Stream/Trace.attach_response(): convenience method to attach response to traces from inventories.
  • added command line script "obspy-print" to print information on local waveform files
• obspy.css:
  • new module for CSS (Center for Seismic Studies) format
  • currently read support for waveform data
• obspy.db:
  • obspy-indexer script uses from now on hash symbols (#) instead of pipe (|) for features because pipe has a special meaning on most operating systems
• obspy.fdsn:
  • new client module to access servers based on the FDSN web service definition (http://www.fdsn.org/webservices/)
• obspy.gse2:
  • read/write STA2 header line which is officialy mandatory but in pratice often not used
• obspy.imaging:
  • more options to customize day plots
  • dayplot now plots matching picks (station, network, location) if a list of event objects is provided using the events kwarg.
  • obspy-scan: new option --print-gaps
  • added plotting of record sections
  • automatic merging can be disabled for obspy-plot
• obspy.pde:
  • new module for reading NEIC PDE bulletin files into an obspy catalog object. Only the "mchedr" format (file format revision of February 24, 2004) is supported.
• obspy.realtime:
  • two new processing plugins (offset, kurtosis)
• obspy.seg2:
  • adding read support for SEG2 data format code 1 and 2 (signed 16bit/32bit integer)
• obspy.segy:
  • fix a bug in plotting (see #689)
• obspy.signal:
  • adding cross correlation single-station similarity checking with master event templates to coincidence trigger
  • add PPSD support for segments of arbitrary length
  • default bin width of PPSD is changed to 1dB. This is the value used by McNamara and Buland 2004.
  • fix a bug when using evalresp with RESP files with very short epochs. see #631.
  • for seisSim(seedresp={...})) for parameter "filename" instead of the path to a local file now also can be provided either a file-like object with RESP information or an obspy.xseed.Parser object (e.g. created reading a dataless SEED file).
  • seisSim(seedresp={...}): the seedresp dictionary now requires network, station, location, and channel keys.
  • removed deprecated psd module - use spectral_estimation module instead
  • removed deprecated sonic function - use array_processing function instead
• obspy.station:
  • adding support for FDSN StationXML
• obspy.mseed:
  • new kwarg arguments for reading mseed files: header_byteorder and verbose
• obspy.neic:
  • new module to access data from CWB QueryServer run at the National Earthquake Information Center (NEIC) in Golden, CO USA.
• obspy.y:
  • adding read support for Nanometrics Y file format
• scripts:
  • obspy-plot: new option "-o" to output plot to file instead of opening a window

- Python
Published by barsch about 12 years ago

obspy - 0.8.0

• general:
  • version numbering: one single, common version number for ObsPy now. Use "import obspy; print obspy.version"
  • discontinuing Python 2.5 support
  • most important classes/functions can be imported like "from obspy import ...", currently: read, Trace, Stream, UTCDateTime and readEvents
• obspy.arclink:
  • refactored attributes in getPAZ to stick better with the SEED standard
• obspy.core:
  • fixing preview generation for sampling rates containing floats
  • fixing deprecated_keywords decorator for the case of removed keywords
  • fixing SLIST and TSPAIR reading/writing of empty traces or traces containing only one or two data points
  • adding taper() method to Trace/Stream using cosTaper of ObsPy and also all scipy windowing functions
  • adding cutout() method to Stream
  • removed all deprecated UTCDateTime methods
  • adding a class and script to determine flinn-engdahl regions for given longitude and latitude
  • adding rotate() method to Stream wrapping rotate functions in obspy.signal
• obspy.imaging:
  • obspy-scan: adding options to control start/endtime and channels, adding options to not plot gaps and reducing file size for plots considerably.
• obspy.iris:
  • output format 'bulk' for Client.availability has been deprecated, use 'bulkdataselect' instead (#419)
• obspy.mseed:
  • Bugfix writing traces containing one or two samples only
  • writeMSEED emits an UserWarning while writing an empty trace
• obspy.sac:
  • fixing SAC and SACXY reading/writing of empty traces or traces containing only one or two data points
  • new debug_headers flag for reading SAC files in order to extract all header variables (issue #390)
• obspy.segy:
  • unpack SEGYTrace.data on-the-fly patch contributed Nathaniel Miller
  • fixing a bug related to negative values in trace header
• obspy.seishub:
  • adding kwarg to control number of retries for failing requests
  • adding obspy.xseed as dependency (in setup.py and debian/control)
  • changing obspy.client.station.getPAZ() call syntax to use seed_id (args/kwargs)
  • adding local caching of requests for PAZ and coordinates to avoid repeated requests to server
• obspy.sh:
  • file extension 'QBN' not added twice anymore if data_directory was set
  • fixing SH_ASC and Q reading/writing of empty traces or traces containing only one or two data points
• obspy.signal:
  • module psd has been refactored to spectral_estimation
  • adding function for cross correlation pick correction
  • removing pitsa-compatibility in response function calculation (no complex conjugate)
  • preventing a possible duplicated overall sensitivity removal in seisSim when using the option seedresp
  • adding optimized C-code for classic STALTA. Runs approximately, 1000x faster than pure python code. It has now the same order of speed as the recursive STALTA
  • new CAPON method for arrayanalysis / arrayprocessing
  • sonic was renamed to array_processing, sonic is now deprecated
• obspy.xseed:
  • fixed a bug with Dataless to XSEED conversion using split_stations=True
  • fixed a bug affecting getPAZ() and getCoordinates() when selecting specific channels from complex dataless files (see: https://github.com/obspy/obspy/issues/412)
  • added getInventory() method to the Parser object. Returns a dictionary about the contents of the Parser object. This is also integrated in the string representation and makes it more informative.
• obspy.mseed:
  • adding experimental details option, which extracts timing quality and info on the calibration

- Python
Published by megies over 12 years ago

obspy - 0.8.1

• fixing a bug parsing QuakeML from a StringIO object using xml and autodetection

- Python
Published by megies over 12 years ago

obspy - 0.8.2

• fixing a bug in plotting methods of Trace and Stream
• stream/trace.plot(type="dayplot") can display event information now

- Python
Published by megies over 12 years ago

obspy - 0.8.3

• circumventing an issue in the current libmseed release that can lead to some float values being read in wrongly

- Python
Published by megies over 12 years ago

obspy - 0.8.4

• bugfixes to make ObsPy work with the latest Python 2.x and NumPy releases
• critical bugfixes for the waveform plotting and the xml wrapper
• bugfix so that copy.deepcopy() works with the obspy.core.stream.Stream class
• fixing some imports

- Python
Published by megies over 12 years ago