polybench

Multivariate polynomial arithmetic benchmark tests.

https://github.com/tueda/polybench

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

○
CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
○
DOI references
○
Academic publication links
✓
Committers with academic emails
1 of 3 committers (33.3%) from academic institutions
○
Institutional organization owner
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (15.9%) to scientific vocabulary

Keywords

benchmark mathematics multivariate-polynomials

Keywords from Contributors

interactive serializer cycles packaging network-simulation shellcodes hacking autograding observability genomics

Last synced: 6 months ago · JSON representation

Repository

Multivariate polynomial arithmetic benchmark tests.

Basic Info

Host: GitHub
Owner: tueda
License: mit
Language: Python
Default Branch: main
Homepage:
Size: 343 KB

Statistics

Stars: 2
Watchers: 2
Forks: 1
Open Issues: 6
Releases: 0

Topics

benchmark mathematics multivariate-polynomials

Created about 5 years ago · Last pushed 6 months ago

Metadata Files

Readme Changelog License

polybench

Multivariate polynomial arithmetic benchmark tests.

Many scientific and engineering applications utilise multivariate polynomial arithmetic in their algorithms and solutions. Here we provide a set of benchmark tests for often-used operations in multivariate polynomial arithmetic:

Greatest common divisor
Factorisation

Requirements

Python >= 3.6.1

You also need at least one or more tools to be benchmarked. They are (in alphabetical order):

Fermat
FLINT: automatically downloaded via vcpkg (requires CMake >= 3.15, a C compiler and the Make utility; see also vcpkg dependencies).
FORM: if not available in the system, then a release binary will be automatically downloaded.
Mathematica: indeed, Free Wolfram Engine for Developers is sufficient to run.
reFORM: automatically downloaded (requires Rust >= 1.36).
Rings: automatically downloaded (requires JDK >= 8).
Singular
Symbolica: automatically downloaded (requires Rust >= 1.85), running in restricted mode.

Getting started

Clone this repository and try to run the run.sh script:

sh git clone https://github.com/tueda/polybench.git cd polybench ./run.sh --all

When starting the script for the first time, it automatically sets up a virtual environment for required Python packages so that it will not dirty your environment. Some of the tools are provided as libraries registered in public package registries, so the first run takes some time to download, compile and link them with test binaries. After testing, a CSV file and comparison plots will be generated.

For practical benchmarking, configuration parameters should be set adequately. See the help message shown by

sh ./run.sh --help

You can also use pip, pipx, Poetry or Docker with this repository. Installation with pip(x) install or poetry install makes a command polybench available, which acts as the run.sh script described above. sh pip install polybench polybench --all python -m polybench --all # alternative way to launch sh pipx install polybench polybench --all sh git clone https://github.com/tueda/polybench.git cd polybench poetry install poetry run polybench --all sh docker build -t polybench:latest https://github.com/tueda/polybench.git docker run -it --rm polybench:latest ./run.sh --all

Example

| | | |----------------|------------------------------------------------------------------------------| | platform | Linux-5.15.0-84-generic-x8664-with-glibc2.29 | | pythonversion | 3.8.10.final.0 (64 bit) | | cpubrand | 12th Gen Intel(R) Core(TM) i9-12900 | | cpucount | 16 (logical: 24) | | totalmemory | 62.6GB | | FLINT | flint 2.9.0, cc (GNU) 10.5.0 | | FORM | FORM 4.3.1 (Apr 11 2023, v4.3.1) 64-bits | | Mathematica | 14.1.0 for Linux x86 (64-bit) (July 22, 2024) | | reFORM | 0.1.0-fix-serialize, rustc 1.84.1 (e71f9a9a9 2025-01-27) | | Rings | 2.5.8, JVM: 11.0.20.1 (Ubuntu 11.0.20.1+1-post-Ubuntu-0ubuntu120.04) | | Singular | Singular for x8664-Linux version 4.4.1 (44100, 64 bit) Jan 2025 | | Symbolica | 0.15.0, rustc 1.84.1 (e71f9a9a9 2025-01-27) |

nontrivial-gcd

nontrivial-factor

Additional benchmark results are available here.

Development

```bash

Initialisation

poetry install pre-commit install

Linting and testing

pre-commit run --all-files poetry run pytest

Linting and testing for Cargo subproject

cd path/to/project cargo fmt cargo clippy cargo test

Linting and testing for Gradle subproject

cd path/to/project ./gradlew spotlessApply ./gradlew check

Test run

./run.sh # for example, --all

Release a new version

./scripts/make-release.sh # for example, 0.3.0rc1 ```

License

MIT

Owner

Name: Takahiro Ueda
Login: tueda
Kind: user

Repositories: 19
Profile: https://github.com/tueda

GitHub Events

Total

Issues event: 7
Watch event: 1
Delete event: 35
Issue comment event: 32
Push event: 55
Pull request event: 60
Fork event: 1
Create event: 34

Last Year

Issues event: 7
Watch event: 1
Delete event: 35
Issue comment event: 32
Push event: 55
Pull request event: 60
Fork event: 1
Create event: 34

Committers

Last synced: 8 months ago

All Time

Total Commits: 116
Total Committers: 3
Avg Commits per committer: 38.667
Development Distribution Score (DDS): 0.138

Past Year

Commits: 67
Committers: 3
Avg Commits per committer: 22.333
Development Distribution Score (DDS): 0.239

Top Committers

Name	Email	Commits
Takahiro Ueda	t**d@j**p	100
dependabot[bot]	4****]	15
Ben Ruijl	b**l@g**m	1

Committer Domains (Top 20 + Academic)

juntendo.ac.jp: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time

Total issues: 11
Total pull requests: 64
Average time to close issues: about 2 months
Average time to close pull requests: about 1 month
Total issue authors: 2
Total pull request authors: 2
Average comments per issue: 0.36
Average comments per pull request: 0.92
Merged pull requests: 24
Bot issues: 0
Bot pull requests: 62

Past Year

Issues: 5
Pull requests: 54
Average time to close issues: 2 days
Average time to close pull requests: 12 days
Issue authors: 2
Pull request authors: 2
Average comments per issue: 0.8
Average comments per pull request: 0.69
Merged pull requests: 22
Bot issues: 0
Bot pull requests: 52

View more stats

Top Authors

Issue Authors

tueda (10)
benruijl (1)

Pull Request Authors

dependabot[bot] (78)
benruijl (2)

Top Labels

Issue Labels

enhancement (5) bug (1)

Pull Request Labels

dependencies (78) java (56) rust (18) github_actions (4)

Packages

Total packages: 1
Total downloads:
- pypi 75 last-month

Total dependent packages: 0
Total dependent repositories: 1
Total versions: 10
Total maintainers: 1

pypi.org: polybench

Multivariate polynomial arithmetic benchmark tests.

Homepage: https://github.com/tueda/polybench
Documentation: https://polybench.readthedocs.io/
License: MIT
Latest release: 0.3.3
published 7 months ago

Versions: 10
Dependent Packages: 0
Dependent Repositories: 1
Downloads: 75 Last month

Rankings

Dependent packages count: 10.0%

Dependent repos count: 21.7%

Average: 27.6%

Forks count: 29.8%

Downloads: 37.6%

Stargazers count: 38.8%

Maintainers (1)

tueda

Last synced: 6 months ago

Dependencies

polybench/solvers/reform/Cargo.lock cargo

aho-corasick 0.7.15
ansi_term 0.11.0
arrayvec 0.4.12
atty 0.2.14
autocfg 1.0.1
az 1.0.0
bitflags 1.2.1
block-buffer 0.7.3
block-padding 0.1.5
byte-tools 0.3.1
byteorder 1.3.4
cfg-if 0.1.10
chrono 0.4.19
clap 2.33.3
cloudabi 0.0.3
crossbeam 0.4.1
crossbeam-channel 0.2.6
crossbeam-deque 0.5.2
crossbeam-epoch 0.5.2
crossbeam-epoch 0.6.1
crossbeam-utils 0.5.0
crossbeam-utils 0.6.6
digest 0.8.1
either 1.6.1
env_logger 0.5.13
fake-simd 0.1.2
fastdivide 0.2.0
fuchsia-cprng 0.1.1
generic-array 0.12.3
gmp-mpfr-sys 1.4.2
hashbrown 0.1.8
hermit-abi 0.1.17
humantime 1.3.0
itertools 0.7.11
lazy_static 1.4.0
libc 0.2.81
lock_api 0.1.5
log 0.4.11
maplit 1.0.2
matrixmultiply 0.1.15
maybe-uninit 2.0.0
memchr 2.3.4
memoffset 0.2.1
ndarray 0.12.1
nodrop 0.1.14
num-complex 0.2.4
num-integer 0.1.44
num-traits 0.2.14
opaque-debug 0.2.3
owning_ref 0.4.1
parking_lot 0.6.4
parking_lot_core 0.3.1
pest 2.1.3
pest_derive 2.1.0
pest_generator 2.1.3
pest_meta 2.1.3
proc-macro2 1.0.24
quick-error 1.2.3
quote 1.0.8
rand 0.5.6
rand_core 0.3.1
rand_core 0.4.2
rawpointer 0.1.0
regex 1.4.2
regex-syntax 0.6.21
rug 1.11.0
rustc_version 0.2.3
scopeguard 0.3.3
semver 0.9.0
semver-parser 0.7.0
sha-1 0.8.2
smallvec 0.6.13
stable_deref_trait 1.2.0
strsim 0.8.0
syn 1.0.56
termcolor 1.1.2
textwrap 0.11.0
thread_local 1.0.1
time 0.1.44
typenum 1.12.0
ucd-trie 0.1.3
unicode-width 0.1.8
unicode-xid 0.2.1
vec_map 0.8.2
wasi 0.10.0+wasi-snapshot-preview1
winapi 0.3.9
winapi-i686-pc-windows-gnu 0.4.0
winapi-util 0.1.5
winapi-x86_64-pc-windows-gnu 0.4.0

polybench/solvers/rings/build.gradle maven

cc.redberry:rings ${versions.rings} implementation

poetry.lock pypi

atomicwrites 1.4.0 develop
attrs 21.2.0 develop
coverage 6.2 develop
iniconfig 1.1.1 develop
packaging 21.3 develop
pluggy 1.0.0 develop
py 1.11.0 develop
pytest 6.2.5 develop
pytest-cov 3.0.0 develop
colorama 0.4.4
colorlog 6.6.0
cycler 0.11.0
importlib-metadata 4.8.3
importlib-resources 5.4.0
kiwisolver 1.3.2
kiwisolver 1.3.1
matplotlib 3.3.4
numpy 1.19.5
numpy 1.21.5
pandas 1.1.5
pillow 8.4.0
pretty-errors 1.2.25
psutil 5.8.0
py-cpuinfo 8.0.0
pyparsing 3.0.6
python-dateutil 2.8.2
pytz 2021.3
six 1.16.0
symengine 0.8.1
toml 0.10.2
tomli 1.2.3
typing-extensions 4.0.1
zipp 3.6.0

pyproject.toml pypi

pytest ^6.2.5 develop
pytest-cov ^3.0.0 develop
colorama ^0.4.4
colorlog ^6.6.0
importlib-metadata ^4.8.3
importlib-resources ^5.4.0
kiwisolver --- - !ruby/hash:ActiveSupport::HashWithIndifferentAccess version: 1.3.1 python: "~3.6.1" - !ruby/hash:ActiveSupport::HashWithIndifferentAccess version: "^1.3.2" python: ">=3.7,<3.11"
matplotlib ^3.3.4
numpy --- - !ruby/hash:ActiveSupport::HashWithIndifferentAccess version: "~1.19.5" python: "~3.6.1" - !ruby/hash:ActiveSupport::HashWithIndifferentAccess version: "^1.21.5" python: ">=3.7,<3.11"
pandas ^1.1.5
pretty-errors ^1.2.25
psutil ^5.8.0
py-cpuinfo ^8.0.0
python ^3.6.1
symengine ^0.8.1
toml ^0.10.2
tomli ^1.2.3
typing-extensions ^4.0.1

.github/workflows/bench.yml actions

actions-rs/toolchain v1 composite
actions/cache v2 composite
actions/checkout v2 composite
actions/setup-java v1 composite
actions/setup-python v2 composite
actions/upload-artifact v2 composite

.github/workflows/lint.yml actions

actions-rs/cargo v1 composite
actions-rs/toolchain v1 composite
actions/cache v2 composite
actions/checkout v2 composite
actions/setup-java v1 composite
actions/setup-python v2 composite
eskatos/gradle-command-action v1 composite
gradle/wrapper-validation-action v1 composite
hadolint/hadolint-action v1.6.0 composite
pre-commit/action v2.0.0 composite

.github/workflows/release.yml actions

Gr1N/setup-poetry v7 composite
actions/checkout v2 composite
actions/setup-python v2 composite

.github/workflows/test.yml actions

actions-rs/toolchain v1 composite
actions/cache v2 composite
actions/checkout v2 composite
actions/setup-java v1 composite
actions/setup-python v2 composite

polybench/solvers/reform/Cargo.toml cargo

Dockerfile docker

ubuntu focal build

polybench/solvers/flint/vcpkg.json vcpkg

flint >=2.9.0

.github/workflows/dependency-submission.yml actions

actions/checkout v4 composite
actions/setup-java v4 composite
gradle/actions/dependency-submission v4 composite

polybench/solvers/symbolica/Cargo.lock cargo

ahash 0.8.11
alloc-no-stdlib 2.0.4
alloc-stdlib 0.2.2
append-only-vec 0.1.5
autocfg 1.3.0
az 1.2.1
brotli 5.0.0
brotli-decompressor 4.0.1
bytemuck 1.17.0
byteorder 1.5.0
bytes 1.7.1
cfg-if 1.0.0
colored 2.1.0
crossbeam-deque 0.8.5
crossbeam-epoch 0.9.18
crossbeam-utils 0.8.20
dyn-clone 1.0.17
either 1.13.0
getrandom 0.2.15
gmp-mpfr-sys 1.6.4
lazy_static 1.5.0
libc 0.2.156
libloading 0.8.5
libm 0.2.8
once_cell 1.19.0
pin-project-lite 0.2.14
ppv-lite86 0.2.20
proc-macro2 1.0.86
quote 1.0.36
rand 0.8.5
rand_chacha 0.3.1
rand_core 0.6.4
rand_xoshiro 0.6.0
rayon 1.10.0
rayon-core 1.12.1
rug 1.25.0
safe_arch 0.7.2
self_cell 1.0.4
serde 1.0.208
serde_derive 1.0.208
smallvec 1.13.2
smartstring 1.0.1
static_assertions 1.1.0
symbolica 0.10.0
syn 2.0.74
tinyjson 2.5.1
tracing 0.1.40
tracing-attributes 0.1.27
tracing-core 0.1.32
unicode-ident 1.0.12
version_check 0.9.5
wasi 0.11.0+wasi-snapshot-preview1
wide 0.7.28
windows-sys 0.48.0
windows-sys 0.52.0
windows-targets 0.48.5
windows-targets 0.52.6
windows_aarch64_gnullvm 0.48.5
windows_aarch64_gnullvm 0.52.6
windows_aarch64_msvc 0.48.5
windows_aarch64_msvc 0.52.6
windows_i686_gnu 0.48.5
windows_i686_gnu 0.52.6
windows_i686_gnullvm 0.52.6
windows_i686_msvc 0.48.5
windows_i686_msvc 0.52.6
windows_x86_64_gnu 0.48.5
windows_x86_64_gnu 0.52.6
windows_x86_64_gnullvm 0.48.5
windows_x86_64_gnullvm 0.52.6
windows_x86_64_msvc 0.48.5
windows_x86_64_msvc 0.52.6
zerocopy 0.7.35
zerocopy-derive 0.7.35

polybench/solvers/symbolica/Cargo.toml cargo

polybench

Science Score: 36.0%

Keywords

Keywords from Contributors

Repository

Basic Info

Statistics

Topics

Metadata Files

README.md

polybench

Requirements

Getting started

Example

Development

Initialisation

Linting and testing

Linting and testing for Cargo subproject

Linting and testing for Gradle subproject

Test run

Release a new version

License

Owner

GitHub Events

Total

Last Year

Committers

All Time

Past Year

Top Committers

Committer Domains (Top 20 + Academic)

Issues and Pull Requests

All Time

Past Year

Top Authors

Issue Authors

Pull Request Authors

Top Labels

Issue Labels

Pull Request Labels

Packages

pypi.org: polybench

Rankings

Maintainers (1)

Dependencies