snpmatch - Version 5.0.1

Class function for HMM on genotyping an F2 cross with known parental genotypes. Fixed few bugs!

- Python
Published by rbpisupati almost 5 years ago

snpmatch - Version 5.0.0

Package is now py3 compatible.

1. Have adopted few functions from pyGWAS.
2. Few updated function in parsers.py
3. Updated HMM function to genotype cross. Changed the output file format to load into Rqtl.
4. Conda package list update along with container.

- Python
Published by rbpisupati almost 5 years ago

snpmatch - Version 4.0.0

Many changes.. 1. Can input gzipped vcf as input file. 2. functions for snp genotype 3. class function for snpmatch 4. docker container

- Python
Published by rbpisupati about 6 years ago

snpmatch - Version 3.0.1

Additional functions for non-thaliana genomes.

- Python
Published by rbpisupati over 6 years ago

snpmatch - Version 2.5.0

Implemented HMM for genotype cross.

- Python
Published by rbpisupati about 7 years ago

snpmatch - Version 2.2.0

Fixed problems during parsing chromosome names and few other bugs.

- Python
Published by rbpisupati over 7 years ago

snpmatch - Version 2.0.0

Few minor bugs. Added a new module parsers.

- Python
Published by rbpisupati about 8 years ago

snpmatch - Version 1.9.2

migrated to scikit-allel! better readme

- Python
Published by rbpisupati over 8 years ago

snpmatch - Version 1.9.0

- Python
Published by rbpisupati over 8 years ago

snpmatch - Version 1.8.0

minor changes, cleaned output filenames

- Python
Published by rbpisupati about 9 years ago

snpmatch - Version 1.7.2

fixed likelihood function!

- Python
Published by rbpisupati about 9 years ago

snpmatch - Version 1.7.1

fixed manifest!

- Python
Published by rbpisupati about 9 years ago

snpmatch - Version 1.7.0

fixed few bugs in parsing, changed README.md

- Python
Published by rbpisupati about 9 years ago

snpmatch - Version 1.6.1

Now compatible to AraGeno! fixed bug fixes!

- Python
Published by rbpisupati over 9 years ago

snpmatch - Version 1.6.0

Simplified functions for crosses and interpretation

- Python
Published by rbpisupati over 9 years ago

snpmatch - Version 1.5.0

bug fixed! checked!

- Python
Published by rbpisupati over 9 years ago

snpmatch - Version 1.4.1

bug fixed!

- Python
Published by rbpisupati over 9 years ago

snpmatch - Version 1.4

new functions, can check f1 cross now

- Python
Published by rbpisupati over 9 years ago

snpmatch - Version 1.3

major update! vcf file need not contain PL score. takes in GL when PL is not present. Takes care of phased SNPs. logging done using best practices

- Python
Published by rbpisupati over 9 years ago

snpmatch - Version 1.2.2

fixed some bugs

- Python
Published by rbpisupati over 9 years ago

snpmatch - Version 1.2

- Python
Published by rbpisupati over 9 years ago