pubmed

Get literature information via PubMed ID, such as the author, title, journal_name, pub_date and so on.

https://github.com/twz915/pubmed

Science Score: 10.0%

This score indicates how likely this project is to be science-related based on various indicators:

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CITATION.cff file
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codemeta.json file
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.zenodo.json file
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DOI references
✓
Academic publication links
Links to: ncbi.nlm.nih.gov
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Committers with academic emails
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Institutional organization owner
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (5.1%) to scientific vocabulary

Keywords

journal literature pubmed reference

Last synced: 6 months ago · JSON representation

Repository

Get literature information via PubMed ID, such as the author, title, journal_name, pub_date and so on.

Basic Info

Host: GitHub
Owner: twz915
License: mit
Language: Python
Default Branch: master
Homepage:
Size: 47.9 KB

Statistics

Stars: 17
Watchers: 5
Forks: 2
Open Issues: 0
Releases: 0

Topics

journal literature pubmed reference

Created about 11 years ago · Last pushed over 9 years ago

Metadata Files

Readme License

README.md

pubmed is used to:

Get literature information via PubMed ID, such as the author, title, journalname, pubdate and so on.
Read csv file downloaded from pubmed search page.

how to download pubmed search results

Install

pip install pubmed

Usage

Query Online

```python from pubmed import PubMed

http://www.ncbi.nlm.nih.gov/pubmed/26471457

pm = PubMed(26471457)

print pm.title print pm.authors print pm.pubdate print pm.journalname print pm.journalfullname

print pm.gettitle() print pm.getauthors() print pm.getpubdate() print pm.getjournalname() print pm.getjournalfull_name()

print pm.getTitle() print pm.getAuthors() print pm.getPubDate() print pm.getJournalName() print pm.getJournalFullName() ```

Read Download File

read csv files download from pubmed ```python from pubmed import OpenCsv

f = OpenCsv('./pubmed_result.csv')

for p in f: print(p.title) print(p.authors) print(p.PMID) ```

demo

```

pm = PubMed(26471457) pm.authors ['Tu W', 'Zhang H', 'Liu J', 'Hu QN'] pm.title 'BioSynther: a customized biosynthetic potential explorer.' pm.pub_date '2016 Feb 1'

```

Owner

Name: WeizhongTu
Login: twz915
Kind: user
Location: Beijing, China
Company: Alibaba

Website: http://www.tuweizhong.com
Repositories: 91
Profile: https://github.com/twz915

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GitHub Events

Total

Last Year

Committers

Last synced: over 2 years ago

All Time

Total Commits: 9
Total Committers: 2
Avg Commits per committer: 4.5
Development Distribution Score (DDS): 0.333

Past Year

Commits: 0
Committers: 0
Avg Commits per committer: 0.0
Development Distribution Score (DDS): 0.0

Top Committers

Name	Email	Commits
WeizhongTu	t**g@1**m	6
Weizhong Tu	m**l@t**m	3

Committer Domains (Top 20 + Academic)

tuweizhong.com: 1 163.com: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time

Total issues: 0
Total pull requests: 0
Average time to close issues: N/A
Average time to close pull requests: N/A
Total issue authors: 0
Total pull request authors: 0
Average comments per issue: 0
Average comments per pull request: 0
Merged pull requests: 0
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 0
Pull requests: 0
Average time to close issues: N/A
Average time to close pull requests: N/A
Issue authors: 0
Pull request authors: 0
Average comments per issue: 0
Average comments per pull request: 0
Merged pull requests: 0
Bot issues: 0
Bot pull requests: 0

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Top Authors

Issue Authors

Pull Request Authors

Top Labels

Issue Labels

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Packages

Total packages: 1
Total downloads:
- pypi 425 last-month

Total dependent packages: 0
Total dependent repositories: 2
Total versions: 3
Total maintainers: 1

pypi.org: pubmed

Get literature information via PubMed ID

Homepage: http://github.com/twz915/pubmed
Documentation: https://pubmed.readthedocs.io/
License: MIT
Latest release: 0.0.1
published over 2 years ago

Versions: 3
Dependent Packages: 0
Dependent Repositories: 2
Downloads: 425 Last month

Rankings

Dependent packages count: 10.0%

Dependent repos count: 11.6%

Average: 14.1%

Stargazers count: 14.2%

Downloads: 15.5%

Forks count: 19.1%

Maintainers (1)

twz915

Last synced: 6 months ago

Dependencies

setup.py pypi

beautifulsoup4 *
pyquery *