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pyafq

Please visit our new location: https://github.com/tractometry/pyAFQ

https://github.com/yeatmanlab/pyafq

Science Score: 62.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    6 of 24 committers (25.0%) from academic institutions
  • ✓
    Institutional organization owner
    Organization yeatmanlab has institutional domain (www.brainandeducation.com)
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (0.7%) to scientific vocabulary

Keywords from Contributors

bids neuroimaging diffusion-mri brain-imaging denoising-images distortion-correction motion-correction pipelines lesson
Last synced: 6 months ago · JSON representation ·

Repository

Please visit our new location: https://github.com/tractometry/pyAFQ

Basic Info
Statistics
  • Stars: 60
  • Watchers: 11
  • Forks: 33
  • Open Issues: 115
  • Releases: 25
Archived
Created about 10 years ago · Last pushed over 1 year ago
Metadata Files
Readme Changelog Contributing License Citation Zenodo

README.md

DEVELOPMENT OF PYAFQ HAS MOVED TO https://github.com/tractometry/pyAFQ

Owner

  • Name: Yeatman Lab
  • Login: yeatmanlab
  • Kind: organization
  • Email: jyeatman@stanford.edu

Brain Development & Education Lab at Stanford

Citation (CITATION) 

@article {Kruper2021evaluating,
	author = {Kruper, John and Yeatman, Jason D. and Richie-Halford, Adam and Bloom, David and Grotheer, Mareike and Caffarra, Sendy and Kiar, Gregory and Karipidis, Iliana I. and Roy, Ethan and Chandio, Bramsh Q. and Garyfallidis, Eleftherios and Rokem, Ariel},
	title = {Evaluating the reliability of human brain white matter tractometry},
	journal = {Aperture},
	year = {2021},
	volume = {1},
	pages = {1-25},
	doi = {10.1101/2021.02.24.432740},
}

GitHub Events

Total
  • Issues event: 5
  • Watch event: 5
  • Issue comment event: 5
  • Pull request event: 4
Last Year
  • Issues event: 5
  • Watch event: 5
  • Issue comment event: 5
  • Pull request event: 4

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 3,242
  • Total Committers: 24
  • Avg Commits per committer: 135.083
  • Development Distribution Score (DDS): 0.548
Past Year
  • Commits: 416
  • Committers: 9
  • Avg Commits per committer: 46.222
  • Development Distribution Score (DDS): 0.392
Top Committers
Name Email Commits
John Kruper j****3@a****t 1,464
Ariel Rokem a****m@g****m 1,086
36000 j****8@o****m 475
Adam Richie-Halford r****d@g****m 40
qiqiliang q****g@y****m 34
bloomdt-uw b****t@u****u 30
Jason Yeatman j****n@s****u 30
Adam Richie-Halford r****d@u****u 17
David Bloom b****t@D****l 14
Greg Kiar g****7@g****m 12
Howard Chiu 1****d 8
Ben Cipollini b****i@c****g 6
bloomdt-uw 6****w 6
Rafael Neto Henriques r****1@g****m 5
Howard Chiu h****u@s****u 4
John K j****n@J****l 2
Andreas 6****f 2
Max Bachmann 4****n 1
Adam Richie-Halford r****d 1
mayayab m****b@g****m 1
jyeatman j****n@u****u 1
pierre-nedelec p****c@u****u 1
Pierre 6****c 1
maxbachmann s****h@m****e 1
Committer Domains (Top 20 + Academic)
uw.edu: 3 stanford.edu: 2 maxbachmann.de: 1 ucsf.edu: 1 classy.org: 1 ymail.com: 1 att.net: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 157
  • Total pull requests: 179
  • Average time to close issues: about 1 year
  • Average time to close pull requests: about 1 month
  • Total issue authors: 28
  • Total pull request authors: 12
  • Average comments per issue: 1.62
  • Average comments per pull request: 2.19
  • Merged pull requests: 136
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 3
  • Pull requests: 4
  • Average time to close issues: N/A
  • Average time to close pull requests: about 1 hour
  • Issue authors: 3
  • Pull request authors: 2
  • Average comments per issue: 1.0
  • Average comments per pull request: 0.5
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • arokem (62)
  • 36000 (38)
  • jyeatman (10)
  • chiuhoward (6)
  • pierre-nedelec (5)
  • dzweben (4)
  • radhi-bhalerao (3)
  • htakemur (2)
  • sleeeeeeepy (2)
  • smeisler (2)
  • teresamg (2)
  • bloomdt-uw (2)
  • dkp (2)
  • TeddyTuresky (2)
  • Hesal-jokerman (1)
Pull Request Authors
  • 36000 (141)
  • arokem (54)
  • chiuhoward (15)
  • teresamg (6)
  • jyeatman (3)
  • pierre-nedelec (3)
  • asagilmore (2)
  • zikaste (2)
  • sambjohnson (1)
  • kesshijordan (1)
  • mayayab (1)
  • qiqiliang (1)
Top Labels
Issue Labels
enhancement (17) effort: low (5) documentation (5) impact: high (3) testing (3) impact: low (2) good first issue (1) bug (1) effort: medium (1) impact: medium (1) help wanted (1) cloud (1) effort: high (1)
Pull Request Labels
investigating (1)

Dependencies

.github/workflows/docbuild.yml actions
  • JamesIves/github-pages-deploy-action releases/v3 composite
  • actions/checkout v1 composite
  • actions/setup-python v1 composite
  • actions/upload-artifact v1 composite
.github/workflows/docker_pyafq.yml actions
  • actions/checkout v1 composite
  • docker/login-action v1 composite
  • docker/setup-buildx-action v1 composite
  • docker/setup-qemu-action v1 composite
.github/workflows/nightly_anisotropic_test.yml actions
  • actions/checkout v1 composite
  • actions/setup-python v1 composite
.github/workflows/nightly_basic_test.yml actions
  • actions/checkout v1 composite
  • actions/setup-python v1 composite
.github/workflows/nightly_custom_test.yml actions
  • actions/checkout v1 composite
  • actions/setup-python v1 composite
.github/workflows/nightly_pft_test.yml actions
  • actions/checkout v1 composite
  • actions/setup-python v1 composite
.github/workflows/nightly_reco80_test.yml actions
  • actions/checkout v1 composite
  • actions/setup-python v1 composite
.github/workflows/nightly_reco_test.yml actions
  • actions/checkout v1 composite
  • actions/setup-python v1 composite
.github/workflows/nightly_test.yml actions
  • actions/checkout v1 composite
  • actions/setup-python v1 composite
.github/workflows/publish-to-test-pypi.yml actions
  • actions/checkout master composite
  • actions/setup-python v1 composite
  • pypa/gh-action-pypi-publish master composite
.github/workflows/test.yml actions
  • actions/checkout v1 composite
  • actions/setup-python v1 composite
pyafq_docker/Dockerfile docker
  • python 3.8 build
.github/workflows/docker_pyafq_cuda12.yml actions
  • actions/checkout v1 composite
  • docker/login-action v1 composite
  • docker/setup-buildx-action v1 composite
  • docker/setup-qemu-action v1 composite
gpu_docker/Dockerfile docker
  • nvidia/cuda ${NVIDIAVERSION} build