Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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✓DOI references
Found 1 DOI reference(s) in README -
○Academic publication links
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✓Committers with academic emails
2 of 2 committers (100.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (6.2%) to scientific vocabulary
Keywords
copasi
modelling-biological-systems
ode
parameter-estimation
systems-biology
Last synced: 6 months ago
·
JSON representation
Repository
A Python Toolbox for COPASI
Basic Info
Statistics
- Stars: 7
- Watchers: 2
- Forks: 4
- Open Issues: 1
- Releases: 0
Topics
copasi
modelling-biological-systems
ode
parameter-estimation
systems-biology
Created about 9 years ago
· Last pushed over 6 years ago
Metadata Files
Readme
ReadMe.md
The code in this repo supports Python 2.7. For PyCoTools that works on Python 3 please see this repo
PyCoTools
A set of tools for interacting with COPASI simulation software from Python.
Version Notice
The code in this repo supports Python 2.7. For PyCoTools that works on Python 3 please see this repo. Note that while the code in this repository is stable, it is no longer maintained and users are recommended to use the Python 3 version.
Tutorials and Documentation
Publication
Owner
- Name: Ciaran Welsh
- Login: CiaranWelsh
- Kind: user
- Location: Seattle / United Kingdom / Auckland
- Company: Biosoftware Development / University of Washington / Auckland
- Repositories: 13
- Profile: https://github.com/CiaranWelsh
Software Engineer at Biosoftware Development
GitHub Events
Total
Last Year
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| CiaranWelsh | c****2@n****k | 1,180 |
| Ciaran Welsh | c****h@n****k | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 14
- Total pull requests: 1
- Average time to close issues: 3 months
- Average time to close pull requests: 2 minutes
- Total issue authors: 7
- Total pull request authors: 1
- Average comments per issue: 2.71
- Average comments per pull request: 0.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- CiaranWelsh (7)
- Niels86 (2)
- paulstapor (1)
- carodgers (1)
- mattgra (1)
- resendeacm (1)
- yishuiaoi (1)
Pull Request Authors
- CiaranWelsh (1)
Top Labels
Issue Labels
feature-request (1)
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- pypi 183 last-month
- Total dependent packages: 0
- Total dependent repositories: 4
- Total versions: 106
- Total maintainers: 1
pypi.org: pycotools
A python toolbox for COPASI
- Homepage: https://github.com/CiaranWelsh/PyCoTools
- Documentation: https://pycotools.readthedocs.io/
- License: GPL4
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Latest release: 1.0.10
published over 6 years ago
Rankings
Dependent repos count: 7.5%
Dependent packages count: 10.0%
Downloads: 10.9%
Average: 12.9%
Forks count: 16.8%
Stargazers count: 19.3%
Maintainers (1)
Last synced:
6 months ago
Dependencies
requirements.txt
pypi
- bioservices *
- lxml *
- matplotlib *
- nbsphinx *
- numpy *
- pandas *
- psutil *
- pylatex *
- scikit_learn *
- scipy *
- seaborn *
- tellurium *
setup.py
pypi
- lxml *
- matplotlib *
- numpy *
- openpyxl *
- pandas *
- psutil *
- scipy *
- seaborn *
- sklearn *
- tellurium *
- xlrd *