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spikesorters

Python-based module with spike sorter wrappers and a simple API for running them.

https://github.com/spikeinterface/spikesorters

Science Score: 10.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 18 committers (5.6%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (2.8%) to scientific vocabulary

Keywords

electrophysiology neuroscience spike-sorting

Keywords from Contributors

data-retrieval
Last synced: 6 months ago · JSON representation

Repository

Python-based module with spike sorter wrappers and a simple API for running them.

Basic Info
Statistics
  • Stars: 20
  • Watchers: 5
  • Forks: 20
  • Open Issues: 30
  • Releases: 0
Archived
Topics
electrophysiology neuroscience spike-sorting
Created over 6 years ago · Last pushed over 4 years ago
Metadata Files
Readme License

README.md

spikesorters (LEGACY)

The spikesorters package has now been integrated into spikeinterface.

This package will be maintained for a while for bug fixes only, then it will be deprecated.

New features and improvements will only be implemented for the spikeinterface package.

Owner

  • Name: SpikeInterface
  • Login: SpikeInterface
  • Kind: organization
  • Email: support@spikeinterface.com

A unified framework for spike sorting. Paper at: https://elifesciences.org/articles/61834

GitHub Events

Total
Last Year

Committers

Last synced: almost 3 years ago

All Time
  • Total Commits: 362
  • Total Committers: 18
  • Avg Commits per committer: 20.111
  • Development Distribution Score (DDS): 0.577
Top Committers
Name Email Commits
Alessio Buccino a****7@g****m 153
Samuel Garcia s****e@g****m 69
yger p****r@g****m 33
colehurwitz c****z@g****m 26
Fernando J. Chaure f****e@u****m 16
cat c****t 16
Matthias H Hennig m****g@g****m 11
Jeremy Magland j****d@g****m 10
Manish Mohapatra m****e@g****m 8
Matthias H. Hennig m****g@e****k 4
Shawn Guo s****n@g****m 4
James Jun j****n@g****m 4
Adam Lowet a****t@g****m 2
Jeremy Magland m****d@u****m 2
mcol m****l@p****t 1
Tom Donoghue t****h@g****m 1
Giuliano Maggi g****o@g****m 1
Tim Sainburg t****b@g****m 1
Committer Domains (Top 20 + Academic)
posteo.net: 1 ed.ac.uk: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 0
  • Total pull requests: 100
  • Average time to close issues: N/A
  • Average time to close pull requests: 7 days
  • Total issue authors: 0
  • Total pull request authors: 16
  • Average comments per issue: 0
  • Average comments per pull request: 2.93
  • Merged pull requests: 92
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
  • alejoe91 (43)
  • samuelgarcia (14)
  • yger (8)
  • ferchaure (8)
  • mhhennig (7)
  • colehurwitz (5)
  • jamesjun (3)
  • catubc (3)
  • alowet (2)
  • Shawn-Guo-CN (1)
  • manimoh (1)
  • khl02007 (1)
  • m-col (1)
  • gmaggi (1)
  • timsainb (1)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 153 last-month
  • Total dependent packages: 1
  • Total dependent repositories: 7
  • Total versions: 25
  • Total maintainers: 1
pypi.org: spikesorters

Python wrappers for popular spike sorters

  • Versions: 25
  • Dependent Packages: 1
  • Dependent Repositories: 7
  • Downloads: 153 Last month
Rankings
Dependent packages count: 4.7%
Dependent repos count: 5.6%
Forks count: 8.6%
Average: 10.3%
Stargazers count: 13.6%
Downloads: 18.8%
Maintainers (1)
alejoe91
Last synced: 6 months ago

Dependencies

requirements_sorters.txt pypi
  • Cython *
  • click *
  • h5py *
  • hdbscan *
  • herdingspikes ==0.3.7
  • isosplit5 *
  • klusta *
  • klustakwik2 ==0.2.6
  • loky *
  • ml_ms4alg ==0.3.2
  • pybind11 *
  • pyqt5 *
  • spyking-circus ==0.9.9
  • tqdm *
  • tridesclous >=1.6.3
setup.py pypi
  • numpy *
  • requests *
  • spikeextractors >=0.9.7
  • spiketoolkit >=0.7.6