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Recent Releases of cytosnake

cytosnake - 0.0.2

What's Changed

  • CytoSnake Bug Fixes From Cell-Health Data Usage by @axiomcura in https://github.com/WayScience/CytoSnake/pull/87

Full Changelog: https://github.com/WayScience/CytoSnake/compare/v0.0.1...v0.0.2

- Python
Published by axiomcura over 2 years ago

cytosnake - intial release

What's Changed

  • Initial DAG implementation by @axiomcura in https://github.com/WayScience/CytoSnake/pull/1
  • Config file implementation and added snakefmt and dry run tests documentation by @axiomcura in https://github.com/WayScience/CytoSnake/pull/5
  • Feature Select Implementation to CytoPipe by @axiomcura in https://github.com/WayScience/CytoSnake/pull/6
  • Implementing iterative support for CytoPipe by @axiomcura in https://github.com/WayScience/CytoSnake/pull/8
  • Multi-processing implementation in aggregation by @axiomcura in https://github.com/WayScience/CytoSnake/pull/10
  • Removed Multi-processing and replaced it with Snakemake's native multiprocessing support by @axiomcura in https://github.com/WayScience/CytoSnake/pull/11
  • Logging implementation for CytoPipe by @axiomcura in https://github.com/WayScience/CytoSnake/pull/14
  • CytoPipe CLI implementation by @axiomcura in https://github.com/WayScience/CytoSnake/pull/15
  • CLI argument handler restructuring by @axiomcura in https://github.com/WayScience/CytoSnake/pull/16
  • Implementing dp_process into cytosnake by @axiomcura in https://github.com/WayScience/CytoSnake/pull/17
  • Renaming CytoPipe to CytoSnake by @axiomcura in https://github.com/WayScience/CytoSnake/pull/19
  • CytoSnake Sphinx Documentation by @axiomcura in https://github.com/WayScience/CytoSnake/pull/20
  • adding pre-commit hooks by @axiomcura in https://github.com/WayScience/CytoSnake/pull/24
  • CytoSnake New Pathing implementation by @axiomcura in https://github.com/WayScience/CytoSnake/pull/26
  • Pre commit formatting applied by @axiomcura in https://github.com/WayScience/CytoSnake/pull/30
  • Helper function implementation by @axiomcura in https://github.com/WayScience/CytoSnake/pull/31
  • Decoupling rule modules into individual components by @axiomcura in https://github.com/WayScience/CytoSnake/pull/33
  • New Workflow: cp_process_singlecells ! by @axiomcura in https://github.com/WayScience/CytoSnake/pull/37
  • Allow CytoSnake to default to mamba as default package manager by @axiomcura in https://github.com/WayScience/CytoSnake/pull/45
  • Add barcode logic to CytoSnake's CLI by @axiomcura in https://github.com/WayScience/CytoSnake/pull/46
  • Replace os library with pathlib in workflow scripts by @axiomcura in https://github.com/WayScience/CytoSnake/pull/47
  • Integrating Configs into helper functions by @axiomcura in https://github.com/WayScience/CytoSnake/pull/50
  • Remove git dep by @axiomcura in https://github.com/WayScience/CytoSnake/pull/52
  • Update CytoTable Environment File by @axiomcura in https://github.com/WayScience/CytoSnake/pull/56
  • Adding annotate module in the cp_process_singlecells workflow by @axiomcura in https://github.com/WayScience/CytoSnake/pull/58
  • adding get_input() helper function by @axiomcura in https://github.com/WayScience/CytoSnake/pull/60
  • Update get_input() function to get_data_path() and implement it within modules by @axiomcura in https://github.com/WayScience/CytoSnake/pull/63
  • Update: Updated Documentation and Deploying Documentation to Read the Docs webpage by @axiomcura in https://github.com/WayScience/CytoSnake/pull/65
  • Rtd build fix by @axiomcura in https://github.com/WayScience/CytoSnake/pull/66
  • logo by @vincerubinetti in https://github.com/WayScience/CytoSnake/pull/69
  • Fixed API not able to be rendered in website by @axiomcura in https://github.com/WayScience/CytoSnake/pull/68
  • Add supporting documents and some cleanup by @gwaybio in https://github.com/WayScience/CytoSnake/pull/71
  • update CLI help documentation by @axiomcura in https://github.com/WayScience/CytoSnake/pull/72
  • Improving Functional Test With pytest Fixtures by @axiomcura in https://github.com/WayScience/CytoSnake/pull/75
  • Adding testing framework documentation by @axiomcura in https://github.com/WayScience/CytoSnake/pull/77

New Contributors

  • @vincerubinetti made their first contribution in https://github.com/WayScience/CytoSnake/pull/69
  • @gwaybio made their first contribution in https://github.com/WayScience/CytoSnake/pull/71

Full Changelog: https://github.com/WayScience/CytoSnake/commits/v0.0.1

- Python
Published by axiomcura over 2 years ago

cytosnake - initial release

What's Changed

  • Initial DAG implementation by @axiomcura in https://github.com/WayScience/CytoSnake/pull/1
  • Config file implementation and added snakefmt and dry run tests documentation by @axiomcura in https://github.com/WayScience/CytoSnake/pull/5
  • Feature Select Implementation to CytoPipe by @axiomcura in https://github.com/WayScience/CytoSnake/pull/6
  • Implementing iterative support for CytoPipe by @axiomcura in https://github.com/WayScience/CytoSnake/pull/8
  • Multi-processing implementation in aggregation by @axiomcura in https://github.com/WayScience/CytoSnake/pull/10
  • Removed Multi-processing and replaced it with Snakemake's native multiprocessing support by @axiomcura in https://github.com/WayScience/CytoSnake/pull/11
  • Logging implementation for CytoPipe by @axiomcura in https://github.com/WayScience/CytoSnake/pull/14
  • CytoPipe CLI implementation by @axiomcura in https://github.com/WayScience/CytoSnake/pull/15
  • CLI argument handler restructuring by @axiomcura in https://github.com/WayScience/CytoSnake/pull/16
  • Implementing dp_process into cytosnake by @axiomcura in https://github.com/WayScience/CytoSnake/pull/17
  • Renaming CytoPipe to CytoSnake by @axiomcura in https://github.com/WayScience/CytoSnake/pull/19
  • CytoSnake Sphinx Documentation by @axiomcura in https://github.com/WayScience/CytoSnake/pull/20
  • adding pre-commit hooks by @axiomcura in https://github.com/WayScience/CytoSnake/pull/24
  • CytoSnake New Pathing implementation by @axiomcura in https://github.com/WayScience/CytoSnake/pull/26
  • Pre commit formatting applied by @axiomcura in https://github.com/WayScience/CytoSnake/pull/30
  • Helper function implementation by @axiomcura in https://github.com/WayScience/CytoSnake/pull/31
  • Decoupling rule modules into individual components by @axiomcura in https://github.com/WayScience/CytoSnake/pull/33
  • New Workflow: cp_process_singlecells ! by @axiomcura in https://github.com/WayScience/CytoSnake/pull/37
  • Allow CytoSnake to default to mamba as default package manager by @axiomcura in https://github.com/WayScience/CytoSnake/pull/45
  • Add barcode logic to CytoSnake's CLI by @axiomcura in https://github.com/WayScience/CytoSnake/pull/46
  • Replace os library with pathlib in workflow scripts by @axiomcura in https://github.com/WayScience/CytoSnake/pull/47
  • Integrating Configs into helper functions by @axiomcura in https://github.com/WayScience/CytoSnake/pull/50
  • Remove git dep by @axiomcura in https://github.com/WayScience/CytoSnake/pull/52
  • Update CytoTable Environment File by @axiomcura in https://github.com/WayScience/CytoSnake/pull/56
  • Adding annotate module in the cp_process_singlecells workflow by @axiomcura in https://github.com/WayScience/CytoSnake/pull/58
  • adding get_input() helper function by @axiomcura in https://github.com/WayScience/CytoSnake/pull/60
  • Update get_input() function to get_data_path() and implement it within modules by @axiomcura in https://github.com/WayScience/CytoSnake/pull/63
  • Update: Updated Documentation and Deploying Documentation to Read the Docs webpage by @axiomcura in https://github.com/WayScience/CytoSnake/pull/65
  • Rtd build fix by @axiomcura in https://github.com/WayScience/CytoSnake/pull/66
  • logo by @vincerubinetti in https://github.com/WayScience/CytoSnake/pull/69
  • Fixed API not able to be rendered in website by @axiomcura in https://github.com/WayScience/CytoSnake/pull/68
  • Add supporting documents and some cleanup by @gwaybio in https://github.com/WayScience/CytoSnake/pull/71
  • update CLI help documentation by @axiomcura in https://github.com/WayScience/CytoSnake/pull/72
  • Improving Functional Test With pytest Fixtures by @axiomcura in https://github.com/WayScience/CytoSnake/pull/75
  • Adding testing framework documentation by @axiomcura in https://github.com/WayScience/CytoSnake/pull/77

New Contributors

  • @axiomcura made their first contribution in https://github.com/WayScience/CytoSnake/pull/1
  • @vincerubinetti made their first contribution in https://github.com/WayScience/CytoSnake/pull/69
  • @gwaybio made their first contribution in https://github.com/WayScience/CytoSnake/pull/71

Full Changelog: https://github.com/WayScience/CytoSnake/commits/v0.0.1

- Python
Published by axiomcura over 2 years ago