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survive

Survival analysis in Python 3

https://github.com/artemmavrin/survive

Science Score: 10.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 2 committers (50.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (14.2%) to scientific vocabulary

Keywords

python statistics survival-analysis
Last synced: 6 months ago · JSON representation

Repository

Survival analysis in Python 3

Basic Info
Statistics
  • Stars: 4
  • Watchers: 2
  • Forks: 1
  • Open Issues: 0
  • Releases: 0
Archived
Topics
python statistics survival-analysis
Created over 7 years ago · Last pushed over 7 years ago
Metadata Files
Readme License

README.rst 

=======
Survive
=======

---------------------------
Survival Analysis in Python
---------------------------

.. image:: https://img.shields.io/pypi/pyversions/survive.svg
    :target: https://pypi.org/project/survive/
    :alt: Python Version

.. image:: https://img.shields.io/pypi/v/survive.svg
    :target: https://pypi.org/project/survive/
    :alt: PyPI Package Version

.. image:: https://travis-ci.com/artemmavrin/survive.svg?branch=master
    :target: https://travis-ci.com/artemmavrin/survive
    :alt: Travis CI Build Status

.. image:: https://codecov.io/gh/artemmavrin/survive/branch/master/graph/badge.svg
    :target: https://codecov.io/gh/artemmavrin/survive
    :alt: Code Coverage

.. image:: https://readthedocs.org/projects/survive-python/badge/?version=latest
    :target: https://survive-python.readthedocs.io/?badge=latest
    :alt: Documentation Status

.. image:: https://img.shields.io/github/license/artemmavrin/survive.svg
    :target: https://github.com/artemmavrin/survive/blob/master/LICENSE
    :alt: GitHub License

Survive is a Python 3 package built on top of `NumPy `__
and `pandas `__ that provides statistical tools for
the analysis of survival, lifetime, and event data.

Website: https://survive-python.readthedocs.io


Installation
~~~~~~~~~~~~

The latest version of Survive can be installed directly after cloning from
`GitHub `__.

.. code-block :: shell

  git clone https://github.com/artemmavrin/survive.git
  cd survive
  make install

Moreover, Survive is on the
`Python Package Index (PyPI) `__, so a recent
version of it can be installed with the `pip `__
tool.

.. code-block :: shell

  python -m pip install survive


Dependencies
~~~~~~~~~~~~

Survive relies on the following scientific computing packages.

* `NumPy `__
* `pandas `__
* `SciPy `__
* `Matplotlib `__


Case Studies
~~~~~~~~~~~~

`Leukemia remission times `__
    A small dataset (42 total observations) separated into two groups with heavy
    right-censoring in one and none in the other.

`Channing House data `__
    A slightly larger dataset (462 total observations) separated into two groups
    with right-censoring and left truncation in both.


API Reference
~~~~~~~~~~~~~

The complete API Reference for Survive is available on
`Read the Docs `__.

Owner

  • Name: Artem Mavrin
  • Login: artemmavrin
  • Kind: user

GitHub Events

Total
Last Year

Committers

Last synced: almost 3 years ago

All Time
  • Total Commits: 125
  • Total Committers: 2
  • Avg Commits per committer: 62.5
  • Development Distribution Score (DDS): 0.088
Top Committers
Name Email Commits
Artem Mavrin a****n@u****u 114
Artem Mavrin a****n@u****m 11
Committer Domains (Top 20 + Academic)
ucsd.edu: 1

Issues and Pull Requests

Last synced: 8 months ago

All Time
  • Total issues: 0
  • Total pull requests: 1
  • Average time to close issues: N/A
  • Average time to close pull requests: 1 minute
  • Total issue authors: 0
  • Total pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
  • artemmavrin (1)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 45 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 3
  • Total versions: 4
  • Total maintainers: 1
pypi.org: survive

Survival analysis in Python

  • Versions: 4
  • Dependent Packages: 0
  • Dependent Repositories: 3
  • Downloads: 45 Last month
Rankings
Dependent repos count: 9.0%
Dependent packages count: 10.0%
Downloads: 13.3%
Average: 15.6%
Forks count: 22.6%
Stargazers count: 23.1%
Maintainers (1)
artemmavrin
Last synced: 6 months ago

Dependencies

doc/requirements.txt pypi
  • ipykernel *
  • ipython *
  • nbsphinx *
  • numpydoc *
  • sphinx >=1.4
  • sphinx_rtd_theme *
requirements.txt pypi
  • matplotlib *
  • numpy *
  • pandas *
  • scipy *
setup.py pypi
  • numpy *