transformers--clipseg
This is the code to train CLIPSeg based on hugging face transformers
Science Score: 44.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Academic email domains
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (8.8%) to scientific vocabulary
Repository
This is the code to train CLIPSeg based on hugging face transformers
Basic Info
- Host: GitHub
- Owner: weimengmeng1999
- License: apache-2.0
- Language: Python
- Default Branch: main
- Size: 10.9 MB
Statistics
- Stars: 3
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
Transformers--CLIPSeg
This is the code to train CLIPSeg based on hugging face transformers
For the training file, please go to /examples/pytorch/contrastive-image-text/run_clipseg.py
Also some changes in modeling_Clipseg.py
To run Clipseg, please follow this code:
bash
python examples/pytorch/contrastive-image-text/run_clipseg.py \
--output_dir "clipseg.." \
--model_name_or_path "CIDAS/clipseg-rd64-refined" \
--feature_extractor_name "CIDAS/clipseg-rd64-refined"\
--image_column "image_path" \
--caption_column "seg_class_name" \
--label_column "mask_path"\
--train_file "../train_instruments.json" \
--validation_file "../valid_instruments.json"" \
--test_file "../test_instruments.json"" \
--max_seq_length 77 \
--remove_unused_columns=False \
--do_train \
--per_device_train_batch_size 24 \
--per_device_eval_batch_size 24 \
--num_train_epochs 400 \
--learning_rate "5e-4" \
--warmup_steps 0 \
--weight_decay 0.1 \
--overwrite_output_dir \
--report_to none
CLIPSeg training summary
CLIPSeg is another model that we want to try to leverage the text/visual prompts to help with our instruments segmentation task. The CLIPSeg can be served for: 1) Referring Expression Segmentation; 2) Generalized Zero-Shot Segmentation; 3) One-Shot Semantic Segmentation
Experiment 1: Training CLIPSeg for EndoVis2017 with Text prompt only
Training stage input: - Query image (samples in EndoVis2017 training set) - Text prompt (segmentation class name/ segmentation class description) Experiment 1.1: Segmentation class name example: ["Bipolar Forceps"] Experiment 1.2: Segmentation class description example: [“Bipolar forceps with double-action fine curved jaws and horizontal serrations, made by medical grade stainless stell and Surgical grade material, includes a handle and a dark or grey plastic like cylindrical shaft, includes a complex robotic joint for connecting the jaws/handle to the shaft”]
Testing stage:
- Input: sample in EndoVis2017 testing set; Text prompt
- Output example (binary) for experiment 1.1: doesn’t work ☹

- Output example (binary) for experiment 1.2: works but results are very similar to the pre-trained CLIPSeg

- In EndoVis2017 testing set: Experiment 1.2: mean IOU= 79.92%
Experiment 2: Training CLIPSeg for EndoVis2017 with randomly mix text and visual support conditionals
Training stage:
- Input:
- Query image (samples in EndoVis2017 training set)
- Text prompt (segmentation class description) Segmentation class description example is the same as described in experiment 1.2 -Visual prompt Using the visual prompting tips described in the paper, i.e. cropping the image and darkening the background.

Testing stage:
Input: sample in EndoVis2017 testing set; Text prompt
Output Example:

- In EndoVis2017 testing set: Experiment 1.2: mean IOU= 81.92% (not much improvement)
Ongoing Experiment: Fine-tuning CLIP as well as training CLIPSeg decoder
Owner
- Name: Meng.Wei
- Login: weimengmeng1999
- Kind: user
- Location: London, UK
- Company: Imperial College London
- Repositories: 19
- Profile: https://github.com/weimengmeng1999
Citation (CITATION.cff)
cff-version: "1.2.0"
date-released: 2020-10
message: "If you use this software, please cite it using these metadata."
title: "Transformers: State-of-the-Art Natural Language Processing"
url: "https://github.com/huggingface/transformers"
authors:
- family-names: Wolf
given-names: Thomas
- family-names: Debut
given-names: Lysandre
- family-names: Sanh
given-names: Victor
- family-names: Chaumond
given-names: Julien
- family-names: Delangue
given-names: Clement
- family-names: Moi
given-names: Anthony
- family-names: Cistac
given-names: Perric
- family-names: Ma
given-names: Clara
- family-names: Jernite
given-names: Yacine
- family-names: Plu
given-names: Julien
- family-names: Xu
given-names: Canwen
- family-names: "Le Scao"
given-names: Teven
- family-names: Gugger
given-names: Sylvain
- family-names: Drame
given-names: Mariama
- family-names: Lhoest
given-names: Quentin
- family-names: Rush
given-names: "Alexander M."
preferred-citation:
type: conference-paper
authors:
- family-names: Wolf
given-names: Thomas
- family-names: Debut
given-names: Lysandre
- family-names: Sanh
given-names: Victor
- family-names: Chaumond
given-names: Julien
- family-names: Delangue
given-names: Clement
- family-names: Moi
given-names: Anthony
- family-names: Cistac
given-names: Perric
- family-names: Ma
given-names: Clara
- family-names: Jernite
given-names: Yacine
- family-names: Plu
given-names: Julien
- family-names: Xu
given-names: Canwen
- family-names: "Le Scao"
given-names: Teven
- family-names: Gugger
given-names: Sylvain
- family-names: Drame
given-names: Mariama
- family-names: Lhoest
given-names: Quentin
- family-names: Rush
given-names: "Alexander M."
booktitle: "Proceedings of the 2020 Conference on Empirical Methods in Natural Language Processing: System Demonstrations"
month: 10
start: 38
end: 45
title: "Transformers: State-of-the-Art Natural Language Processing"
year: 2020
publisher: "Association for Computational Linguistics"
url: "https://www.aclweb.org/anthology/2020.emnlp-demos.6"
address: "Online"
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Dependencies
- nvidia/cuda 11.2.2-cudnn8-devel-ubuntu20.04 build
- ubuntu 18.04 build
- python 3.8 build
- nvidia/cuda 10.2-cudnn7-devel-ubuntu18.04 build
- $BASE_DOCKER_IMAGE latest build
- ubuntu 18.04 build
- nvcr.io/nvidia/pytorch 21.03-py3 build
- nvcr.io/nvidia/pytorch 21.03-py3 build
- nvidia/cuda 11.2.2-cudnn8-devel-ubuntu20.04 build
- google/cloud-sdk slim build
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- nvidia/cuda 11.2.2-cudnn8-devel-ubuntu20.04 build
- nvcr.io/nvidia/pytorch 22.02-py3 build
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- python-dateutil ==2.8.1
- pytoml ==0.1.21
- pytz ==2020.1
- pyzmq ==19.0.2
- qtconsole ==4.7.7
- regex ==2020.7.14
- requests ==2.22.0
- retrying ==1.3.3
- sacremoses ==0.0.43
- sentencepiece ==0.1.91
- six ==1.14.0
- terminado ==0.8.3
- testpath ==0.4.4
- tokenizers ==0.8.1rc2
- torch ==1.6.0
- torchvision ==0.7.0
- tornado ==6.0.4
- tqdm ==4.48.2
- traitlets *
- urllib3 ==1.26.5
- wcwidth ==0.2.5
- webencodings ==0.5.1
- wget ==3.2
- widgetsnbextension ==3.5.1
- xxhash ==2.0.0
- datasets >=1.1.3
- ltp *
- protobuf *
- sentencepiece *
- h5py >=2.10.0
- knockknock >=0.1.8.1
- numpy >=1.18.2
- scipy >=1.4.1
- torch >=1.4.0
- torch >=1.10
- conllu *
- datasets >=1.1.3
- elasticsearch *
- faiss-cpu *
- fire *
- git-python ==1.0.3
- matplotlib *
- nltk *
- pandas *
- protobuf *
- psutil *
- pytest *
- pytorch-lightning *
- rouge-score *
- sacrebleu *
- scikit-learn *
- sentencepiece *
- seqeval *
- streamlit *
- tensorboard *
- tensorflow_datasets *
- transformers ==3.5.1
- GitPython *
- datasets >=1.0.1
- faiss-cpu >=1.6.3
- psutil >=5.7.0
- pytorch-lightning >=1.5.10
- ray >=1.10.0
- torch >=1.4.0
- transformers *
- datasets *
- faiss-cpu >=1.7.2
- nvidia-ml-py3 ==7.352.0
- psutil >=5.9.1
- pytorch-lightning ==1.6.4
- ray >=1.13.0
- torch >=1.11.0
- accelerate *
- datasets >=1.8.0
- protobuf *
- scikit-learn *
- scipy *
- sentencepiece *
- torch >=1.3
- conllu *
- datasets >=1.1.3
- elasticsearch *
- faiss-cpu *
- fire *
- git-python ==1.0.3
- matplotlib *
- nltk *
- pandas *
- protobuf *
- psutil *
- pytest *
- pytorch-lightning *
- rouge-score *
- sacrebleu *
- scikit-learn *
- sentencepiece *
- streamlit *
- tensorboard *
- tensorflow_datasets *
- datasets *
- nltk *
- numpy *
- pandas *
- CacheControl ==0.12.6
- Jinja2 >=2.11.3
- MarkupSafe ==1.1.1
- Pillow >=8.1.1
- PyYAML >=5.4
- Pygments >=2.7.4
- QtPy ==1.9.0
- Send2Trash ==1.5.0
- appdirs ==1.4.3
- argon2-cffi ==20.1.0
- async-generator ==1.10
- attrs ==20.2.0
- backcall ==0.2.0
- certifi ==2020.6.20
- cffi ==1.14.2
- chardet ==3.0.4
- click ==7.1.2
- colorama ==0.4.3
- contextlib2 ==0.6.0
- cycler ==0.10.0
- datasets ==1.0.0
- decorator ==4.4.2
- defusedxml ==0.6.0
- dill ==0.3.2
- distlib ==0.3.0
- distro ==1.4.0
- entrypoints ==0.3
- filelock ==3.0.12
- future ==0.18.2
- html5lib ==1.0.1
- idna ==2.8
- ipaddr ==2.2.0
- ipykernel ==5.3.4
- ipython *
- ipython-genutils ==0.2.0
- ipywidgets ==7.5.1
- jedi ==0.17.2
- joblib ==1.2.0
- jsonschema ==3.2.0
- jupyter ==1.0.0
- jupyter-client ==6.1.7
- jupyter-console ==6.2.0
- jupyter-core ==4.6.3
- jupyterlab-pygments ==0.1.1
- kiwisolver ==1.2.0
- lockfile ==0.12.2
- matplotlib ==3.3.1
- mistune ==2.0.3
- msgpack ==0.6.2
- nbclient ==0.5.0
- nbconvert ==6.5.1
- nbformat ==5.0.7
- nest-asyncio ==1.4.0
- notebook ==6.4.12
- numpy ==1.22.0
- opencv-python ==4.4.0.42
- packaging ==20.3
- pandas ==1.1.2
- pandocfilters ==1.4.2
- parso ==0.7.1
- pep517 ==0.8.2
- pexpect ==4.8.0
- pickleshare ==0.7.5
- progress ==1.5
- prometheus-client ==0.8.0
- prompt-toolkit ==3.0.7
- ptyprocess ==0.6.0
- pyaml ==20.4.0
- pyarrow ==1.0.1
- pycparser ==2.20
- pyparsing ==2.4.6
- pyrsistent ==0.16.0
- python-dateutil ==2.8.1
- pytoml ==0.1.21
- pytz ==2020.1
- pyzmq ==19.0.2
- qtconsole ==4.7.7
- regex ==2020.7.14
- requests ==2.22.0
- retrying ==1.3.3
- sacremoses ==0.0.43
- sentencepiece ==0.1.91
- six ==1.14.0
- terminado ==0.8.3
- testpath ==0.4.4
- tokenizers ==0.8.1rc2
- torch ==1.6.0
- torchvision ==0.7.0
- tornado ==6.0.4
- tqdm ==4.48.2
- traitlets *
- urllib3 ==1.26.5
- wcwidth ==0.2.5
- webencodings ==0.5.1
- wget ==3.2
- widgetsnbextension ==3.5.1
- xxhash ==2.0.0
- datasets *
- jiwer ==2.2.0
- lang-trans ==0.6.0
- librosa ==0.8.0
- torch >=1.5.0
- torchaudio *
- transformers *
- datasets >=1.18.0
- jiwer *
- librosa *
- torch >=1.5
- torchaudio *
- accelerate main test
- conllu * test
- datasets >=1.13.3 test
- elasticsearch * test
- evaluate >=0.2.0 test
- faiss-cpu * test
- fire * test
- git-python ==1.0.3 test
- jiwer * test
- librosa * test
- matplotlib * test
- nltk * test
- pandas * test
- protobuf * test
- psutil * test
- pytest * test
- rouge-score * test
- sacrebleu >=1.4.12 test
- scikit-learn * test
- sentencepiece * test
- seqeval * test
- streamlit * test
- tensorboard * test
- tensorflow * test
- tensorflow_datasets * test
- tensorflow >=2.3
- datasets >=1.8.0
- sentencepiece *
- protobuf *
- sentencepiece *
- tensorflow >=2.3
- datasets >=1.4.0
- evaluate >=0.2.0
- tensorflow >=2.3.0
- datasets >=1.4.0
- evaluate >=0.2.0
- tensorflow >=2.3.0
- datasets >=1.1.3
- evaluate >=0.2.0
- protobuf *
- sentencepiece *
- tensorflow >=2.3
- datasets >=1.4.0
- evaluate >=0.2.0
- tensorflow >=2.3.0
- datasets >=1.4.0
- evaluate >=0.2.0
- tensorflow >=2.3.0
- deps *
- datasets ==1.8.0 test