marferret - v1.1.1

MarFERReT protein sequence reference library change log

v1.1.1

Improvements to MarFERReT assembly scripts - Incorporated inclusion/exclusion flag into build procedure to integrate QC process - Added check to see if translated protein sequence already exists - Changed scripts to pull database version from input metadata file - Streamlined the internal file naming process - Important output files are now generated with the same version ID as the input metadata.csv - The /data/source_seqs/ directory for input source sequences is now pre-generated

Added test data set and demo tutorial - Added a small data set to test the MarFERRet build process under /versions/v1demo/ - Seven-entry metadata.csv file (MarFERReT.v1demo.metadata.csv) - Compressed tarball with small set of FASTA sequences (demominientries.tar.gz) - Demo tutorial script (marferret.v1_demo.tutorial.sh)

Zenodo repository release - Input metadata files and output files generated by the assemblemarferret.sh, pfamannotate.sh, and builddiamonddb.sh MarFERReT build scripts have been deposited in a Zenodo repository linked to the v1.1.1 codebase: https://doi.org/10.5281/zenodo.10553848

- Python
Published by rdgroussman over 2 years ago

marferret - v1.1.0

This release is associated with the v1.1 release of the MarFERReT reference library: https://zenodo.org/records/10170983

- Python
Published by rdgroussman over 2 years ago